Hb_005662_030

Information

Type -
Description -
Location Contig5662: 25883-28935
Sequence    

Annotation

kegg
ID rcu:RCOM_1518710
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002527386.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9SIP0
description Ras-related protein RABA5d OS=Arabidopsis thaliana GN=RABA5D PE=1 SV=1
trembl
ID B9SN17
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1518710 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba5d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49064: 25900-29158
cDNA
(Sanger)
(ID:Location)		 014_B01.ab1: 25926-28828 , 046_A06.ab1: 26026-28535

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005662_030 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_001862_190 0.0691455048 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
3 Hb_000620_010 0.0717821148 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
4 Hb_000184_110 0.0718049733 - - hypothetical protein F383_18769 [Gossypium arboreum]
5 Hb_000028_610 0.0720921347 - - PREDICTED: uncharacterized protein LOC105644291 [Jatropha curcas]
6 Hb_006065_020 0.0739850686 - - -
7 Hb_001017_040 0.0757124059 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
8 Hb_003641_050 0.0759776306 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
9 Hb_004724_200 0.07681845 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
10 Hb_005306_110 0.0777819777 - - casein kinase, putative [Ricinus communis]
11 Hb_000481_040 0.0780070826 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
12 Hb_048937_040 0.0786440345 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
13 Hb_000392_300 0.0789203869 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
14 Hb_033153_050 0.079289024 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
15 Hb_000000_080 0.0800153134 - - lipoate-protein ligase B, putative [Ricinus communis]
16 Hb_009265_080 0.080496128 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
17 Hb_039837_010 0.0815063603 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
18 Hb_000034_050 0.0837362452 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
19 Hb_000030_010 0.08490957 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
20 Hb_029920_050 0.0851755423 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]

Gene co-expression network

sample Hb_005662_030 Hb_005662_030 Hb_001862_190 Hb_001862_190 Hb_005662_030--Hb_001862_190 Hb_000620_010 Hb_000620_010 Hb_005662_030--Hb_000620_010 Hb_000184_110 Hb_000184_110 Hb_005662_030--Hb_000184_110 Hb_000028_610 Hb_000028_610 Hb_005662_030--Hb_000028_610 Hb_006065_020 Hb_006065_020 Hb_005662_030--Hb_006065_020 Hb_001017_040 Hb_001017_040 Hb_005662_030--Hb_001017_040 Hb_033153_050 Hb_033153_050 Hb_001862_190--Hb_033153_050 Hb_000134_090 Hb_000134_090 Hb_001862_190--Hb_000134_090 Hb_006922_100 Hb_006922_100 Hb_001862_190--Hb_006922_100 Hb_001322_190 Hb_001322_190 Hb_001862_190--Hb_001322_190 Hb_007477_080 Hb_007477_080 Hb_001862_190--Hb_007477_080 Hb_000120_950 Hb_000120_950 Hb_000620_010--Hb_000120_950 Hb_000436_070 Hb_000436_070 Hb_000620_010--Hb_000436_070 Hb_000009_170 Hb_000009_170 Hb_000620_010--Hb_000009_170 Hb_004724_200 Hb_004724_200 Hb_000620_010--Hb_004724_200 Hb_000699_140 Hb_000699_140 Hb_000620_010--Hb_000699_140 Hb_000184_110--Hb_001017_040 Hb_005396_130 Hb_005396_130 Hb_000184_110--Hb_005396_130 Hb_004452_100 Hb_004452_100 Hb_000184_110--Hb_004452_100 Hb_000729_050 Hb_000729_050 Hb_000184_110--Hb_000729_050 Hb_108216_040 Hb_108216_040 Hb_000184_110--Hb_108216_040 Hb_003641_050 Hb_003641_050 Hb_000028_610--Hb_003641_050 Hb_000367_010 Hb_000367_010 Hb_000028_610--Hb_000367_010 Hb_007026_030 Hb_007026_030 Hb_000028_610--Hb_007026_030 Hb_002893_150 Hb_002893_150 Hb_000028_610--Hb_002893_150 Hb_000207_310 Hb_000207_310 Hb_000028_610--Hb_000207_310 Hb_000392_300 Hb_000392_300 Hb_006065_020--Hb_000392_300 Hb_000000_080 Hb_000000_080 Hb_006065_020--Hb_000000_080 Hb_000089_220 Hb_000089_220 Hb_006065_020--Hb_000089_220 Hb_000721_010 Hb_000721_010 Hb_006065_020--Hb_000721_010 Hb_006185_050 Hb_006185_050 Hb_006065_020--Hb_006185_050 Hb_000120_800 Hb_000120_800 Hb_001017_040--Hb_000120_800 Hb_000179_020 Hb_000179_020 Hb_001017_040--Hb_000179_020 Hb_001017_040--Hb_005396_130 Hb_002039_010 Hb_002039_010 Hb_001017_040--Hb_002039_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
160.034 39.2977 40.8473 46.0087 112.28 129.388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.5707 76.4763 89.5128 50.518 44.005

CAGE analysis