Hb_005663_060

Information

Type -
Description -
Location Contig5663: 79734-83021
Sequence    

Annotation

kegg
ID tcc:TCM_034340
description Uncharacterized protein isoform 1
nr
ID XP_012447331.1
description PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2TSE9
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G189400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49068: 79802-82983
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005663_060 0.0 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
2 Hb_003092_040 0.0482114162 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
3 Hb_032202_190 0.0493791365 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
4 Hb_006922_100 0.0551644695 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
5 Hb_007441_120 0.0583749711 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
6 Hb_002016_110 0.0618487932 - - transducin family protein [Populus trichocarpa]
7 Hb_000409_020 0.0651005089 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
8 Hb_007691_030 0.0657822997 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
9 Hb_002105_040 0.0659954046 - - -
10 Hb_004109_090 0.0662348289 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_003929_160 0.0665602994 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
12 Hb_007416_280 0.067181155 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000445_420 0.067337817 - - protein transporter, putative [Ricinus communis]
14 Hb_001818_090 0.0676090275 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000030_300 0.067709726 - - Thioredoxin, putative [Ricinus communis]
16 Hb_005618_170 0.0680562711 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
17 Hb_000876_070 0.0686634973 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
18 Hb_005305_080 0.0689571858 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
19 Hb_002026_180 0.0690936264 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
20 Hb_004254_120 0.071112618 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005663_060 Hb_005663_060 Hb_003092_040 Hb_003092_040 Hb_005663_060--Hb_003092_040 Hb_032202_190 Hb_032202_190 Hb_005663_060--Hb_032202_190 Hb_006922_100 Hb_006922_100 Hb_005663_060--Hb_006922_100 Hb_007441_120 Hb_007441_120 Hb_005663_060--Hb_007441_120 Hb_002016_110 Hb_002016_110 Hb_005663_060--Hb_002016_110 Hb_000409_020 Hb_000409_020 Hb_005663_060--Hb_000409_020 Hb_007416_280 Hb_007416_280 Hb_003092_040--Hb_007416_280 Hb_000510_130 Hb_000510_130 Hb_003092_040--Hb_000510_130 Hb_007691_030 Hb_007691_030 Hb_003092_040--Hb_007691_030 Hb_003092_040--Hb_032202_190 Hb_003126_050 Hb_003126_050 Hb_003092_040--Hb_003126_050 Hb_004254_120 Hb_004254_120 Hb_032202_190--Hb_004254_120 Hb_000876_070 Hb_000876_070 Hb_032202_190--Hb_000876_070 Hb_005618_170 Hb_005618_170 Hb_032202_190--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_032202_190--Hb_005305_080 Hb_032202_190--Hb_007691_030 Hb_004055_030 Hb_004055_030 Hb_006922_100--Hb_004055_030 Hb_000020_190 Hb_000020_190 Hb_006922_100--Hb_000020_190 Hb_001862_190 Hb_001862_190 Hb_006922_100--Hb_001862_190 Hb_006922_100--Hb_007441_120 Hb_001199_020 Hb_001199_020 Hb_006922_100--Hb_001199_020 Hb_007441_120--Hb_002016_110 Hb_028872_140 Hb_028872_140 Hb_007441_120--Hb_028872_140 Hb_000445_420 Hb_000445_420 Hb_007441_120--Hb_000445_420 Hb_007441_120--Hb_004055_030 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_002026_180 Hb_002026_180 Hb_002016_110--Hb_002026_180 Hb_189003_080 Hb_189003_080 Hb_002016_110--Hb_189003_080 Hb_000030_300 Hb_000030_300 Hb_002016_110--Hb_000030_300 Hb_003206_070 Hb_003206_070 Hb_000409_020--Hb_003206_070 Hb_000898_040 Hb_000898_040 Hb_000409_020--Hb_000898_040 Hb_004109_090 Hb_004109_090 Hb_000409_020--Hb_004109_090 Hb_002687_110 Hb_002687_110 Hb_000409_020--Hb_002687_110 Hb_000409_020--Hb_002016_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.028 8.23127 8.03015 9.96816 13.9647 17.3397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6505 16.6756 19.3968 9.9006 8.41495

CAGE analysis