Hb_005663_110

Information

Type -
Description -
Location Contig5663: 122279-131892
Sequence    

Annotation

kegg
ID rcu:RCOM_1600180
description scythe/bat3, putative
nr
ID XP_012073691.1
description PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
swissprot
ID Q9Z1R2
description Large proline-rich protein BAG6 OS=Mus musculus GN=Bag6 PE=1 SV=1
trembl
ID A0A067KX49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08136 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49073: 127624-128039 , PASA_asmbl_49074: 122401-129325 , PASA_asmbl_49075: 130305-131871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005663_110 0.0 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
2 Hb_003544_030 0.0520713538 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
3 Hb_001434_080 0.0571117819 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
4 Hb_004677_050 0.0580170865 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
5 Hb_000984_170 0.0593182627 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
6 Hb_000327_250 0.0619879082 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
7 Hb_039946_050 0.0681702119 - - catalytic, putative [Ricinus communis]
8 Hb_000069_120 0.0686264452 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
9 Hb_000981_030 0.0693557884 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
10 Hb_010142_020 0.069521046 - - conserved hypothetical protein [Ricinus communis]
11 Hb_029243_030 0.0695537316 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
12 Hb_179306_020 0.0695567387 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
13 Hb_006452_120 0.0695656345 - - PREDICTED: protein FAM188A [Jatropha curcas]
14 Hb_012286_040 0.0702558719 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
15 Hb_001258_110 0.0705819158 - - transporter, putative [Ricinus communis]
16 Hb_000614_240 0.0718627382 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
17 Hb_002989_020 0.0721576572 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
18 Hb_001500_140 0.0732692468 - - pelota, putative [Ricinus communis]
19 Hb_000836_460 0.0733537697 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
20 Hb_001999_310 0.074133657 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_005663_110 Hb_005663_110 Hb_003544_030 Hb_003544_030 Hb_005663_110--Hb_003544_030 Hb_001434_080 Hb_001434_080 Hb_005663_110--Hb_001434_080 Hb_004677_050 Hb_004677_050 Hb_005663_110--Hb_004677_050 Hb_000984_170 Hb_000984_170 Hb_005663_110--Hb_000984_170 Hb_000327_250 Hb_000327_250 Hb_005663_110--Hb_000327_250 Hb_039946_050 Hb_039946_050 Hb_005663_110--Hb_039946_050 Hb_003544_030--Hb_000327_250 Hb_003544_030--Hb_001434_080 Hb_016347_010 Hb_016347_010 Hb_003544_030--Hb_016347_010 Hb_006452_120 Hb_006452_120 Hb_003544_030--Hb_006452_120 Hb_017387_010 Hb_017387_010 Hb_003544_030--Hb_017387_010 Hb_001500_140 Hb_001500_140 Hb_001434_080--Hb_001500_140 Hb_011016_050 Hb_011016_050 Hb_001434_080--Hb_011016_050 Hb_002989_020 Hb_002989_020 Hb_001434_080--Hb_002989_020 Hb_001434_080--Hb_000327_250 Hb_002213_020 Hb_002213_020 Hb_004677_050--Hb_002213_020 Hb_004677_050--Hb_000984_170 Hb_004677_050--Hb_016347_010 Hb_004208_050 Hb_004208_050 Hb_004677_050--Hb_004208_050 Hb_002749_060 Hb_002749_060 Hb_004677_050--Hb_002749_060 Hb_004030_080 Hb_004030_080 Hb_000984_170--Hb_004030_080 Hb_000984_170--Hb_006452_120 Hb_000011_060 Hb_000011_060 Hb_000984_170--Hb_000011_060 Hb_002908_050 Hb_002908_050 Hb_000984_170--Hb_002908_050 Hb_000327_250--Hb_016347_010 Hb_004096_110 Hb_004096_110 Hb_000327_250--Hb_004096_110 Hb_021576_010 Hb_021576_010 Hb_000327_250--Hb_021576_010 Hb_041327_010 Hb_041327_010 Hb_039946_050--Hb_041327_010 Hb_179306_020 Hb_179306_020 Hb_039946_050--Hb_179306_020 Hb_000099_030 Hb_000099_030 Hb_039946_050--Hb_000099_030 Hb_000069_120 Hb_000069_120 Hb_039946_050--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_039946_050--Hb_000537_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.03761 13.0378 8.29031 17.0656 9.49776 11.0999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.98083 9.30681 9.243 19.8469 11.9295

CAGE analysis