Hb_005665_100

Information

Type -
Description -
Location Contig5665: 58178-58942
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07800g
description POPTRDRAFT_202521; hypothetical protein
nr
ID XP_011003837.1
description PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
swissprot
ID Q8L9T5
description RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2
trembl
ID B9HND1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0009s07800g PE=4 SV=2
Gene Ontology
ID GO:0046872
description ring-h2 finger protein atl63

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005665_100 0.0 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
2 Hb_000664_010 0.0340683056 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
3 Hb_018910_010 0.0377139898 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
4 Hb_000049_190 0.0388555586 - - nucleotide binding protein, putative [Ricinus communis]
5 Hb_005614_060 0.0427914825 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
6 Hb_002471_310 0.0441609059 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
7 Hb_002308_040 0.0442064589 - - methyladenine glycosylase family protein [Populus trichocarpa]
8 Hb_029584_030 0.0471085822 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
9 Hb_004693_040 0.0524391382 - - -
10 Hb_000227_290 0.0607109688 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
11 Hb_001568_040 0.0615036292 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001357_110 0.0621122585 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
13 Hb_011224_030 0.0692438428 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
14 Hb_004440_030 0.0716116303 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
15 Hb_001496_150 0.0741758991 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
16 Hb_150179_010 0.0806227001 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
17 Hb_007007_140 0.0832300994 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
18 Hb_024066_020 0.083716842 - - P66 protein [Hevea brasiliensis]
19 Hb_004225_010 0.094382492 - - -
20 Hb_002263_050 0.0958274483 - - hypothetical protein POPTR_0016s06160g [Populus trichocarpa]

Gene co-expression network

sample Hb_005665_100 Hb_005665_100 Hb_000664_010 Hb_000664_010 Hb_005665_100--Hb_000664_010 Hb_018910_010 Hb_018910_010 Hb_005665_100--Hb_018910_010 Hb_000049_190 Hb_000049_190 Hb_005665_100--Hb_000049_190 Hb_005614_060 Hb_005614_060 Hb_005665_100--Hb_005614_060 Hb_002471_310 Hb_002471_310 Hb_005665_100--Hb_002471_310 Hb_002308_040 Hb_002308_040 Hb_005665_100--Hb_002308_040 Hb_029584_030 Hb_029584_030 Hb_000664_010--Hb_029584_030 Hb_000664_010--Hb_002471_310 Hb_011224_030 Hb_011224_030 Hb_000664_010--Hb_011224_030 Hb_000664_010--Hb_002308_040 Hb_150179_010 Hb_150179_010 Hb_000664_010--Hb_150179_010 Hb_018910_010--Hb_000049_190 Hb_004693_040 Hb_004693_040 Hb_018910_010--Hb_004693_040 Hb_001568_040 Hb_001568_040 Hb_018910_010--Hb_001568_040 Hb_018910_010--Hb_002308_040 Hb_018910_010--Hb_002471_310 Hb_000049_190--Hb_001568_040 Hb_000049_190--Hb_005614_060 Hb_000049_190--Hb_004693_040 Hb_000049_190--Hb_002308_040 Hb_004440_030 Hb_004440_030 Hb_005614_060--Hb_004440_030 Hb_005614_060--Hb_000664_010 Hb_000227_290 Hb_000227_290 Hb_005614_060--Hb_000227_290 Hb_005614_060--Hb_029584_030 Hb_002471_310--Hb_002308_040 Hb_002471_310--Hb_004693_040 Hb_002471_310--Hb_029584_030 Hb_024066_020 Hb_024066_020 Hb_002471_310--Hb_024066_020 Hb_002308_040--Hb_004693_040 Hb_007007_140 Hb_007007_140 Hb_002308_040--Hb_007007_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.292709 1.47416 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.225111

CAGE analysis