Hb_005666_010

Information

Type -
Description -
Location Contig5666: 2192-2879
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17490g
description POPTRDRAFT_247314; hypothetical protein
nr
ID XP_012084640.1
description PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15083 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49086: 2079-2986 , PASA_asmbl_49087: 2097-3046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005666_010 0.0 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
2 Hb_000815_010 0.074255521 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
3 Hb_000742_040 0.0820695143 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
4 Hb_007317_050 0.0892092155 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
5 Hb_164853_010 0.0911921586 - - Patatin precursor, putative [Ricinus communis]
6 Hb_012675_010 0.0912838783 - - zinc finger protein, putative [Ricinus communis]
7 Hb_016734_110 0.094943931 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
8 Hb_124677_070 0.0960818698 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
9 Hb_000666_040 0.0964153731 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
10 Hb_001141_270 0.10216546 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
11 Hb_002999_020 0.1042146622 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
12 Hb_123713_010 0.1081146527 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_001623_560 0.1101163997 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
14 Hb_000141_050 0.1147477093 - - hypothetical protein POPTR_0001s00460g [Populus trichocarpa]
15 Hb_105377_010 0.1148070761 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
16 Hb_135592_010 0.1161142545 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007477_010 0.1165615083 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
18 Hb_009662_040 0.1165738363 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
19 Hb_188742_010 0.1166142616 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
20 Hb_003055_160 0.1186480924 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005666_010 Hb_005666_010 Hb_000815_010 Hb_000815_010 Hb_005666_010--Hb_000815_010 Hb_000742_040 Hb_000742_040 Hb_005666_010--Hb_000742_040 Hb_007317_050 Hb_007317_050 Hb_005666_010--Hb_007317_050 Hb_164853_010 Hb_164853_010 Hb_005666_010--Hb_164853_010 Hb_012675_010 Hb_012675_010 Hb_005666_010--Hb_012675_010 Hb_016734_110 Hb_016734_110 Hb_005666_010--Hb_016734_110 Hb_001141_270 Hb_001141_270 Hb_000815_010--Hb_001141_270 Hb_007477_010 Hb_007477_010 Hb_000815_010--Hb_007477_010 Hb_002999_020 Hb_002999_020 Hb_000815_010--Hb_002999_020 Hb_000815_010--Hb_000742_040 Hb_000815_010--Hb_016734_110 Hb_124677_070 Hb_124677_070 Hb_000742_040--Hb_124677_070 Hb_000742_040--Hb_002999_020 Hb_000796_110 Hb_000796_110 Hb_000742_040--Hb_000796_110 Hb_000742_040--Hb_016734_110 Hb_153258_030 Hb_153258_030 Hb_000742_040--Hb_153258_030 Hb_000802_040 Hb_000802_040 Hb_000742_040--Hb_000802_040 Hb_000109_200 Hb_000109_200 Hb_007317_050--Hb_000109_200 Hb_005353_010 Hb_005353_010 Hb_007317_050--Hb_005353_010 Hb_000020_170 Hb_000020_170 Hb_007317_050--Hb_000020_170 Hb_007317_050--Hb_016734_110 Hb_000666_040 Hb_000666_040 Hb_007317_050--Hb_000666_040 Hb_031012_030 Hb_031012_030 Hb_007317_050--Hb_031012_030 Hb_164853_010--Hb_012675_010 Hb_003420_010 Hb_003420_010 Hb_164853_010--Hb_003420_010 Hb_000141_050 Hb_000141_050 Hb_164853_010--Hb_000141_050 Hb_013394_110 Hb_013394_110 Hb_164853_010--Hb_013394_110 Hb_000336_010 Hb_000336_010 Hb_164853_010--Hb_000336_010 Hb_012675_010--Hb_000141_050 Hb_012675_010--Hb_003420_010 Hb_188742_010 Hb_188742_010 Hb_012675_010--Hb_188742_010 Hb_001158_210 Hb_001158_210 Hb_012675_010--Hb_001158_210 Hb_128935_010 Hb_128935_010 Hb_012675_010--Hb_128935_010 Hb_016734_110--Hb_002999_020 Hb_016734_110--Hb_000666_040 Hb_001568_040 Hb_001568_040 Hb_016734_110--Hb_001568_040 Hb_016734_110--Hb_153258_030 Hb_001496_150 Hb_001496_150 Hb_016734_110--Hb_001496_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0451842 9.77812 21.9568 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0805548 0 0.0661105 1.40075

CAGE analysis