Hb_005666_030

Information

Type -
Description -
Location Contig5666: 50621-51495
Sequence    

Annotation

kegg
ID cmo:103489421
description uncharacterized LOC103489421
nr
ID XP_008446805.1
description PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005666_030 0.0 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
2 Hb_004968_090 0.0062666607 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
3 Hb_005551_030 0.0152493763 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
4 Hb_001231_020 0.0304466976 - - -
5 Hb_001691_130 0.0388197052 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
6 Hb_106274_010 0.0471078269 - - hypothetical protein VITISV_008825 [Vitis vinifera]
7 Hb_002630_030 0.0605925347 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
8 Hb_015824_020 0.0691531265 - - -
9 Hb_023386_030 0.0728552501 - - -
10 Hb_011987_010 0.0815539297 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
11 Hb_000367_150 0.0984562842 - - -
12 Hb_000497_310 0.1058138672 - - conserved hypothetical protein [Ricinus communis]
13 Hb_019135_010 0.1233772018 - - -
14 Hb_002041_010 0.1244882155 - - -
15 Hb_011716_120 0.1343709465 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
16 Hb_007456_030 0.1364613288 - - -
17 Hb_007632_140 0.136489622 - - -
18 Hb_014109_020 0.1399894903 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
19 Hb_000476_030 0.1419391856 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
20 Hb_005029_030 0.1456075735 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]

Gene co-expression network

sample Hb_005666_030 Hb_005666_030 Hb_004968_090 Hb_004968_090 Hb_005666_030--Hb_004968_090 Hb_005551_030 Hb_005551_030 Hb_005666_030--Hb_005551_030 Hb_001231_020 Hb_001231_020 Hb_005666_030--Hb_001231_020 Hb_001691_130 Hb_001691_130 Hb_005666_030--Hb_001691_130 Hb_106274_010 Hb_106274_010 Hb_005666_030--Hb_106274_010 Hb_002630_030 Hb_002630_030 Hb_005666_030--Hb_002630_030 Hb_004968_090--Hb_005551_030 Hb_004968_090--Hb_001231_020 Hb_004968_090--Hb_001691_130 Hb_004968_090--Hb_106274_010 Hb_004968_090--Hb_002630_030 Hb_005551_030--Hb_001231_020 Hb_005551_030--Hb_106274_010 Hb_005551_030--Hb_001691_130 Hb_005551_030--Hb_002630_030 Hb_001231_020--Hb_106274_010 Hb_001231_020--Hb_001691_130 Hb_001231_020--Hb_002630_030 Hb_001691_130--Hb_002630_030 Hb_001691_130--Hb_106274_010 Hb_011987_010 Hb_011987_010 Hb_106274_010--Hb_011987_010 Hb_000367_150 Hb_000367_150 Hb_002630_030--Hb_000367_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0430283 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0418192 0.415886

CAGE analysis