Hb_005667_040

Information

Type -
Description -
Location Contig5667: 30672-36302
Sequence    

Annotation

kegg
ID rcu:RCOM_0700340
description Transport protein particle subunit trs31, putative
nr
ID XP_012071476.1
description PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
swissprot
ID Q54YG5
description Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1
trembl
ID A0A067KUL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04011 PE=4 SV=1
Gene Ontology
ID GO:0005622
description trafficking protein particle complex subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49089: 34570-34874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005667_040 0.0 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
2 Hb_002686_110 0.0730519159 - - -
3 Hb_004709_010 0.0825697606 - - hypothetical protein B456_007G097300 [Gossypium raimondii]
4 Hb_014720_040 0.0851788901 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
5 Hb_005278_020 0.0856288769 - - PREDICTED: sorcin-like [Jatropha curcas]
6 Hb_026314_020 0.0927983604 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
7 Hb_006573_020 0.0928088705 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
8 Hb_002289_120 0.0936279749 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
9 Hb_000005_090 0.0938145467 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
10 Hb_004784_020 0.0968364771 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
11 Hb_000152_420 0.0973271204 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
12 Hb_000111_380 0.0974083409 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
13 Hb_004157_030 0.100546752 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
14 Hb_000656_170 0.1008130079 - - lsm1, putative [Ricinus communis]
15 Hb_031089_040 0.1022052013 - - thioredoxin H-type 1 [Hevea brasiliensis]
16 Hb_004502_020 0.1024199329 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
17 Hb_002296_040 0.1031433681 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
18 Hb_078185_010 0.1041294869 - - -
19 Hb_000473_020 0.1061295623 - - expressed protein, putative [Ricinus communis]
20 Hb_012022_120 0.1065002566 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005667_040 Hb_005667_040 Hb_002686_110 Hb_002686_110 Hb_005667_040--Hb_002686_110 Hb_004709_010 Hb_004709_010 Hb_005667_040--Hb_004709_010 Hb_014720_040 Hb_014720_040 Hb_005667_040--Hb_014720_040 Hb_005278_020 Hb_005278_020 Hb_005667_040--Hb_005278_020 Hb_026314_020 Hb_026314_020 Hb_005667_040--Hb_026314_020 Hb_006573_020 Hb_006573_020 Hb_005667_040--Hb_006573_020 Hb_002686_110--Hb_004709_010 Hb_000160_060 Hb_000160_060 Hb_002686_110--Hb_000160_060 Hb_087749_010 Hb_087749_010 Hb_002686_110--Hb_087749_010 Hb_005000_330 Hb_005000_330 Hb_002686_110--Hb_005000_330 Hb_000768_210 Hb_000768_210 Hb_002686_110--Hb_000768_210 Hb_004709_010--Hb_014720_040 Hb_011330_020 Hb_011330_020 Hb_004709_010--Hb_011330_020 Hb_004709_010--Hb_087749_010 Hb_000676_140 Hb_000676_140 Hb_004709_010--Hb_000676_140 Hb_001016_150 Hb_001016_150 Hb_014720_040--Hb_001016_150 Hb_003894_070 Hb_003894_070 Hb_014720_040--Hb_003894_070 Hb_000836_470 Hb_000836_470 Hb_014720_040--Hb_000836_470 Hb_000005_090 Hb_000005_090 Hb_014720_040--Hb_000005_090 Hb_005278_020--Hb_026314_020 Hb_012022_120 Hb_012022_120 Hb_005278_020--Hb_012022_120 Hb_017413_010 Hb_017413_010 Hb_005278_020--Hb_017413_010 Hb_001016_030 Hb_001016_030 Hb_005278_020--Hb_001016_030 Hb_001842_040 Hb_001842_040 Hb_005278_020--Hb_001842_040 Hb_004784_020 Hb_004784_020 Hb_005278_020--Hb_004784_020 Hb_000826_100 Hb_000826_100 Hb_026314_020--Hb_000826_100 Hb_002343_060 Hb_002343_060 Hb_026314_020--Hb_002343_060 Hb_026314_020--Hb_000005_090 Hb_019762_020 Hb_019762_020 Hb_026314_020--Hb_019762_020 Hb_001318_250 Hb_001318_250 Hb_026314_020--Hb_001318_250 Hb_000808_190 Hb_000808_190 Hb_006573_020--Hb_000808_190 Hb_003494_050 Hb_003494_050 Hb_006573_020--Hb_003494_050 Hb_001057_040 Hb_001057_040 Hb_006573_020--Hb_001057_040 Hb_000002_380 Hb_000002_380 Hb_006573_020--Hb_000002_380 Hb_186982_040 Hb_186982_040 Hb_006573_020--Hb_186982_040 Hb_006573_020--Hb_000005_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.74753 2.64762 6.07451 11.1777 6.15606 11.0725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6179 21.4474 5.50944 4.53876 4.53838

CAGE analysis