Hb_005671_030

Information

Type -
Description -
Location Contig5671: 65337-66723
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005671_030 0.0 - - -
2 Hb_187661_010 0.11409805 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
3 Hb_008891_020 0.1366425093 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
4 Hb_056305_010 0.1366902349 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_002257_070 0.1368941891 - - hypothetical protein, partial [Pseudomonas fluorescens]
6 Hb_003017_010 0.1374812182 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]
7 Hb_003985_020 0.1391323929 - - -
8 Hb_012587_010 0.1415952434 - - -
9 Hb_066620_010 0.1465704691 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
10 Hb_044767_010 0.1484884566 - - -
11 Hb_001887_030 0.150544994 - - -
12 Hb_000934_220 0.1647701337 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
13 Hb_142068_020 0.1665482063 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
14 Hb_000454_020 0.1674313441 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_000188_090 0.1690652759 - - JHL22C18.10 [Jatropha curcas]
16 Hb_010222_010 0.1715578906 - - -
17 Hb_000656_130 0.1724971818 - - hypothetical protein PRUPE_ppa026157mg, partial [Prunus persica]
18 Hb_001676_030 0.184377509 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_003556_020 0.2099050759 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
20 Hb_002463_080 0.2126340068 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_005671_030 Hb_005671_030 Hb_187661_010 Hb_187661_010 Hb_005671_030--Hb_187661_010 Hb_008891_020 Hb_008891_020 Hb_005671_030--Hb_008891_020 Hb_056305_010 Hb_056305_010 Hb_005671_030--Hb_056305_010 Hb_002257_070 Hb_002257_070 Hb_005671_030--Hb_002257_070 Hb_003017_010 Hb_003017_010 Hb_005671_030--Hb_003017_010 Hb_003985_020 Hb_003985_020 Hb_005671_030--Hb_003985_020 Hb_187661_010--Hb_008891_020 Hb_187661_010--Hb_056305_010 Hb_187661_010--Hb_002257_070 Hb_187661_010--Hb_003017_010 Hb_187661_010--Hb_003985_020 Hb_012587_010 Hb_012587_010 Hb_187661_010--Hb_012587_010 Hb_008891_020--Hb_056305_010 Hb_008891_020--Hb_002257_070 Hb_008891_020--Hb_003017_010 Hb_008891_020--Hb_003985_020 Hb_008891_020--Hb_012587_010 Hb_066620_010 Hb_066620_010 Hb_008891_020--Hb_066620_010 Hb_056305_010--Hb_002257_070 Hb_056305_010--Hb_003017_010 Hb_056305_010--Hb_003985_020 Hb_056305_010--Hb_012587_010 Hb_056305_010--Hb_066620_010 Hb_002257_070--Hb_003017_010 Hb_002257_070--Hb_003985_020 Hb_002257_070--Hb_012587_010 Hb_002257_070--Hb_066620_010 Hb_003017_010--Hb_003985_020 Hb_003017_010--Hb_012587_010 Hb_003017_010--Hb_066620_010 Hb_003985_020--Hb_012587_010 Hb_003985_020--Hb_066620_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.927 0 0 0 0 62.8923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.22919 1.87574 0

CAGE analysis