Hb_005672_030

Information

Type -
Description -
Location Contig5672: 46308-48573
Sequence    

Annotation

kegg
ID cmo:103495957
description high mobility group B protein 1-like
nr
ID XP_012086327.1
description PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
swissprot
ID O49595
description High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1
trembl
ID W9RDH1
description High mobility group B protein 1 OS=Morus notabilis GN=L484_001986 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49169: 46319-46793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005672_030 0.0 - - PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
2 Hb_000975_130 0.1099848812 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
3 Hb_003811_050 0.1146908975 - - hypothetical protein JCGZ_01310 [Jatropha curcas]
4 Hb_000956_060 0.1223810664 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
5 Hb_000676_130 0.1265143561 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
6 Hb_002580_020 0.14063094 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
7 Hb_000853_010 0.144861035 - - Pectinesterase-3 precursor, putative [Ricinus communis]
8 Hb_001195_210 0.1569839443 - - -
9 Hb_000007_070 0.1606114144 - - hypothetical protein POPTR_0008s11290g [Populus trichocarpa]
10 Hb_012516_030 0.1609252128 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
11 Hb_001416_170 0.162593017 - - kinase, putative [Ricinus communis]
12 Hb_081191_010 0.1642157231 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]
13 Hb_006834_010 0.1652866989 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004631_030 0.1664438205 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
15 Hb_000297_220 0.1674884667 - - SAUR family protein [Theobroma cacao]
16 Hb_014865_010 0.179147491 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
17 Hb_055147_020 0.1820552245 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
18 Hb_000080_080 0.184451561 - - -
19 Hb_000552_060 0.1853977763 - - PREDICTED: theobromine synthase 2-like isoform X3 [Jatropha curcas]
20 Hb_000429_030 0.1854596335 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005672_030 Hb_005672_030 Hb_000975_130 Hb_000975_130 Hb_005672_030--Hb_000975_130 Hb_003811_050 Hb_003811_050 Hb_005672_030--Hb_003811_050 Hb_000956_060 Hb_000956_060 Hb_005672_030--Hb_000956_060 Hb_000676_130 Hb_000676_130 Hb_005672_030--Hb_000676_130 Hb_002580_020 Hb_002580_020 Hb_005672_030--Hb_002580_020 Hb_000853_010 Hb_000853_010 Hb_005672_030--Hb_000853_010 Hb_000975_130--Hb_000956_060 Hb_000975_130--Hb_003811_050 Hb_000975_130--Hb_000853_010 Hb_000975_130--Hb_000676_130 Hb_004631_030 Hb_004631_030 Hb_000975_130--Hb_004631_030 Hb_000007_070 Hb_000007_070 Hb_003811_050--Hb_000007_070 Hb_081191_010 Hb_081191_010 Hb_003811_050--Hb_081191_010 Hb_003811_050--Hb_002580_020 Hb_003811_050--Hb_000956_060 Hb_003811_050--Hb_000676_130 Hb_000297_220 Hb_000297_220 Hb_000956_060--Hb_000297_220 Hb_000956_060--Hb_004631_030 Hb_012516_030 Hb_012516_030 Hb_000956_060--Hb_012516_030 Hb_000956_060--Hb_000676_130 Hb_014865_010 Hb_014865_010 Hb_000676_130--Hb_014865_010 Hb_000676_130--Hb_002580_020 Hb_009615_030 Hb_009615_030 Hb_002580_020--Hb_009615_030 Hb_002580_020--Hb_081191_010 Hb_006834_010 Hb_006834_010 Hb_002580_020--Hb_006834_010 Hb_002580_020--Hb_000853_010 Hb_001416_170 Hb_001416_170 Hb_000853_010--Hb_001416_170 Hb_000853_010--Hb_006834_010 Hb_000853_010--Hb_003811_050 Hb_004984_020 Hb_004984_020 Hb_000853_010--Hb_004984_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.433914 0.744484 2.85702 0 0.0524922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0695402 0 1.5324 0

CAGE analysis