Hb_005675_040

Information

Type transcription factor
Description TF Family: ERF
Location Contig5675: 35742-38071
Sequence    

Annotation

kegg
ID gmx:102660769
description uncharacterized LOC102660769
nr
ID CBI27026.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7T955
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03460 PE=4 SV=1
Gene Ontology
ID GO:0005739
description conserved peptide upstream open reading frame 53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49171: 35799-37762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005675_040 0.0 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
2 Hb_003052_140 0.0652137263 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
3 Hb_000125_170 0.0780389075 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
4 Hb_140506_010 0.0803399442 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
5 Hb_002411_030 0.0823571997 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
6 Hb_005541_010 0.0837930788 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
7 Hb_004767_050 0.0854410312 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
8 Hb_045793_010 0.0867826107 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
9 Hb_076693_020 0.089184223 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
10 Hb_000322_150 0.0896898569 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
11 Hb_011491_010 0.0902190761 - - Protein YME1, putative [Ricinus communis]
12 Hb_004228_030 0.0904681975 - - unnamed protein product [Coffea canephora]
13 Hb_001818_070 0.0908232414 - - carbon catabolite repressor protein, putative [Ricinus communis]
14 Hb_036790_100 0.0908827789 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
15 Hb_003581_070 0.0929189986 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]
16 Hb_001005_190 0.0937385977 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
17 Hb_000201_100 0.0956552914 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
18 Hb_003609_030 0.095855269 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
19 Hb_031527_020 0.0969328751 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
20 Hb_006316_040 0.0972664925 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]

Gene co-expression network

sample Hb_005675_040 Hb_005675_040 Hb_003052_140 Hb_003052_140 Hb_005675_040--Hb_003052_140 Hb_000125_170 Hb_000125_170 Hb_005675_040--Hb_000125_170 Hb_140506_010 Hb_140506_010 Hb_005675_040--Hb_140506_010 Hb_002411_030 Hb_002411_030 Hb_005675_040--Hb_002411_030 Hb_005541_010 Hb_005541_010 Hb_005675_040--Hb_005541_010 Hb_004767_050 Hb_004767_050 Hb_005675_040--Hb_004767_050 Hb_000336_250 Hb_000336_250 Hb_003052_140--Hb_000336_250 Hb_003052_140--Hb_000125_170 Hb_005016_160 Hb_005016_160 Hb_003052_140--Hb_005016_160 Hb_007416_180 Hb_007416_180 Hb_003052_140--Hb_007416_180 Hb_003052_140--Hb_005541_010 Hb_000181_070 Hb_000181_070 Hb_000125_170--Hb_000181_070 Hb_031527_040 Hb_031527_040 Hb_000125_170--Hb_031527_040 Hb_000373_150 Hb_000373_150 Hb_000125_170--Hb_000373_150 Hb_000125_170--Hb_007416_180 Hb_003464_050 Hb_003464_050 Hb_000125_170--Hb_003464_050 Hb_001818_070 Hb_001818_070 Hb_140506_010--Hb_001818_070 Hb_140506_010--Hb_005541_010 Hb_021576_110 Hb_021576_110 Hb_140506_010--Hb_021576_110 Hb_000049_260 Hb_000049_260 Hb_140506_010--Hb_000049_260 Hb_140506_010--Hb_000125_170 Hb_140506_010--Hb_004767_050 Hb_000983_090 Hb_000983_090 Hb_002411_030--Hb_000983_090 Hb_005137_050 Hb_005137_050 Hb_002411_030--Hb_005137_050 Hb_002411_030--Hb_005541_010 Hb_001728_050 Hb_001728_050 Hb_002411_030--Hb_001728_050 Hb_000130_240 Hb_000130_240 Hb_002411_030--Hb_000130_240 Hb_005541_010--Hb_005016_160 Hb_000334_220 Hb_000334_220 Hb_005541_010--Hb_000334_220 Hb_012564_030 Hb_012564_030 Hb_005541_010--Hb_012564_030 Hb_048219_010 Hb_048219_010 Hb_004767_050--Hb_048219_010 Hb_004767_050--Hb_001818_070 Hb_000592_090 Hb_000592_090 Hb_004767_050--Hb_000592_090 Hb_003467_020 Hb_003467_020 Hb_004767_050--Hb_003467_020 Hb_011491_010 Hb_011491_010 Hb_004767_050--Hb_011491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.5163 46.2649 18.733 15.9327 25.8747 36.0782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8074 37.5374 28.9014 17.0643 14.0293

CAGE analysis