Hb_005675_050

Information

Type -
Description -
Location Contig5675: 47200-52604
Sequence    

Annotation

kegg
ID rcu:RCOM_0030540
description alpha-glucosidase, putative (EC:3.2.1.20)
nr
ID XP_002531635.1
description alpha-glucosidase, putative [Ricinus communis]
swissprot
ID Q9S7Y7
description Alpha-xylosidase 1 OS=Arabidopsis thaliana GN=XYL1 PE=1 SV=1
trembl
ID B9T066
description Alpha-glucosidase, putative OS=Ricinus communis GN=RCOM_0030540 PE=3 SV=1
Gene Ontology
ID GO:0004558
description alpha-xylosidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49172: 47206-52560 , PASA_asmbl_49174: 50964-51468 , PASA_asmbl_49175: 49298-49846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005675_050 0.0 - - alpha-glucosidase, putative [Ricinus communis]
2 Hb_004122_010 0.0626286124 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
3 Hb_003666_070 0.0800614576 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
4 Hb_007632_160 0.0866677588 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000739_170 0.0937779811 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
6 Hb_003097_130 0.0942196306 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000418_170 0.0956657849 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
8 Hb_001157_050 0.0983896358 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
9 Hb_168918_010 0.1004378853 - - pectin acetylesterase, putative [Ricinus communis]
10 Hb_000297_210 0.1041587238 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
11 Hb_008304_010 0.106829024 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
12 Hb_005181_170 0.1076316574 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
13 Hb_004592_010 0.1076875279 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
14 Hb_021065_010 0.1077236886 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
15 Hb_000003_750 0.1090095687 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
16 Hb_009767_060 0.1092985533 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
17 Hb_002045_010 0.1095970439 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
18 Hb_000120_340 0.1096060244 - - Cucumisin precursor, putative [Ricinus communis]
19 Hb_000112_080 0.1114629879 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
20 Hb_001514_030 0.1116959053 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_005675_050 Hb_005675_050 Hb_004122_010 Hb_004122_010 Hb_005675_050--Hb_004122_010 Hb_003666_070 Hb_003666_070 Hb_005675_050--Hb_003666_070 Hb_007632_160 Hb_007632_160 Hb_005675_050--Hb_007632_160 Hb_000739_170 Hb_000739_170 Hb_005675_050--Hb_000739_170 Hb_003097_130 Hb_003097_130 Hb_005675_050--Hb_003097_130 Hb_000418_170 Hb_000418_170 Hb_005675_050--Hb_000418_170 Hb_000297_210 Hb_000297_210 Hb_004122_010--Hb_000297_210 Hb_001514_030 Hb_001514_030 Hb_004122_010--Hb_001514_030 Hb_004122_010--Hb_007632_160 Hb_168918_010 Hb_168918_010 Hb_004122_010--Hb_168918_010 Hb_005181_170 Hb_005181_170 Hb_004122_010--Hb_005181_170 Hb_000120_340 Hb_000120_340 Hb_003666_070--Hb_000120_340 Hb_003666_070--Hb_168918_010 Hb_004592_010 Hb_004592_010 Hb_003666_070--Hb_004592_010 Hb_003666_070--Hb_007632_160 Hb_011671_050 Hb_011671_050 Hb_003666_070--Hb_011671_050 Hb_001157_050 Hb_001157_050 Hb_007632_160--Hb_001157_050 Hb_000418_110 Hb_000418_110 Hb_007632_160--Hb_000418_110 Hb_007632_160--Hb_000120_340 Hb_000086_470 Hb_000086_470 Hb_007632_160--Hb_000086_470 Hb_000739_170--Hb_004122_010 Hb_002805_180 Hb_002805_180 Hb_000739_170--Hb_002805_180 Hb_008304_010 Hb_008304_010 Hb_000739_170--Hb_008304_010 Hb_002045_010 Hb_002045_010 Hb_000739_170--Hb_002045_010 Hb_000739_170--Hb_004592_010 Hb_021065_010 Hb_021065_010 Hb_003097_130--Hb_021065_010 Hb_003097_130--Hb_004122_010 Hb_001287_090 Hb_001287_090 Hb_003097_130--Hb_001287_090 Hb_009767_060 Hb_009767_060 Hb_003097_130--Hb_009767_060 Hb_003097_130--Hb_005181_170 Hb_000627_040 Hb_000627_040 Hb_000418_170--Hb_000627_040 Hb_022092_110 Hb_022092_110 Hb_000418_170--Hb_022092_110 Hb_005730_110 Hb_005730_110 Hb_000418_170--Hb_005730_110 Hb_001936_180 Hb_001936_180 Hb_000418_170--Hb_001936_180 Hb_000418_170--Hb_021065_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208327 4.96539 63.064 54.7259 0.129825 0.0769894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1658 0.0869822 1.56108 11.3991 26.9784

CAGE analysis