Hb_005675_060

Information

Type -
Description -
Location Contig5675: 62708-63034
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13580g
description hypothetical protein
nr
ID XP_012082081.1
description PREDICTED: protein NIM1-INTERACTING 2 [Jatropha curcas]
swissprot
ID Q9LUA3
description Protein NIM1-INTERACTING 2 OS=Arabidopsis thaliana GN=NIMIN-2 PE=1 SV=1
trembl
ID A0A067KC37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49176: 62612-63153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005675_060 0.0 - - PREDICTED: protein NIM1-INTERACTING 2 [Jatropha curcas]
2 Hb_000803_310 0.1762883204 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
3 Hb_004945_020 0.2362552562 - - PREDICTED: probable calcium-binding protein CML30 [Vitis vinifera]
4 Hb_001907_130 0.2366180921 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
5 Hb_027472_130 0.2403693737 - - Cytochrome P450 [Theobroma cacao]
6 Hb_000401_010 0.2424592657 - - SAB, putative [Ricinus communis]
7 Hb_131864_030 0.242906293 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
8 Hb_163430_010 0.2446312814 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
9 Hb_000058_050 0.2506264474 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
10 Hb_115116_010 0.2526283729 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
11 Hb_001369_470 0.2701652509 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
12 Hb_000608_220 0.2722134129 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
13 Hb_011485_030 0.2727976594 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
14 Hb_065452_010 0.2750504957 - - conserved hypothetical protein [Ricinus communis]
15 Hb_129204_020 0.276769765 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
16 Hb_002235_190 0.278535978 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000197_050 0.279398816 - - AGPase large subunit protein [Hevea brasiliensis]
18 Hb_009659_030 0.2797247715 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
19 Hb_014497_030 0.2887045124 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
20 Hb_086639_100 0.2889993449 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105646787 [Jatropha curcas]

Gene co-expression network

sample Hb_005675_060 Hb_005675_060 Hb_000803_310 Hb_000803_310 Hb_005675_060--Hb_000803_310 Hb_004945_020 Hb_004945_020 Hb_005675_060--Hb_004945_020 Hb_001907_130 Hb_001907_130 Hb_005675_060--Hb_001907_130 Hb_027472_130 Hb_027472_130 Hb_005675_060--Hb_027472_130 Hb_000401_010 Hb_000401_010 Hb_005675_060--Hb_000401_010 Hb_131864_030 Hb_131864_030 Hb_005675_060--Hb_131864_030 Hb_163430_010 Hb_163430_010 Hb_000803_310--Hb_163430_010 Hb_001481_010 Hb_001481_010 Hb_000803_310--Hb_001481_010 Hb_005724_050 Hb_005724_050 Hb_000803_310--Hb_005724_050 Hb_000058_050 Hb_000058_050 Hb_000803_310--Hb_000058_050 Hb_000834_050 Hb_000834_050 Hb_000803_310--Hb_000834_050 Hb_001214_150 Hb_001214_150 Hb_004945_020--Hb_001214_150 Hb_005946_120 Hb_005946_120 Hb_004945_020--Hb_005946_120 Hb_002631_220 Hb_002631_220 Hb_004945_020--Hb_002631_220 Hb_004945_020--Hb_131864_030 Hb_126648_010 Hb_126648_010 Hb_004945_020--Hb_126648_010 Hb_011344_100 Hb_011344_100 Hb_001907_130--Hb_011344_100 Hb_170516_010 Hb_170516_010 Hb_001907_130--Hb_170516_010 Hb_115116_010 Hb_115116_010 Hb_001907_130--Hb_115116_010 Hb_065452_010 Hb_065452_010 Hb_001907_130--Hb_065452_010 Hb_001907_130--Hb_000803_310 Hb_001269_510 Hb_001269_510 Hb_027472_130--Hb_001269_510 Hb_002960_110 Hb_002960_110 Hb_027472_130--Hb_002960_110 Hb_027472_130--Hb_000058_050 Hb_027472_130--Hb_131864_030 Hb_000613_040 Hb_000613_040 Hb_027472_130--Hb_000613_040 Hb_000189_390 Hb_000189_390 Hb_027472_130--Hb_000189_390 Hb_000235_050 Hb_000235_050 Hb_000401_010--Hb_000235_050 Hb_003050_150 Hb_003050_150 Hb_000401_010--Hb_003050_150 Hb_002235_190 Hb_002235_190 Hb_000401_010--Hb_002235_190 Hb_000205_280 Hb_000205_280 Hb_000401_010--Hb_000205_280 Hb_000297_030 Hb_000297_030 Hb_000401_010--Hb_000297_030 Hb_002025_270 Hb_002025_270 Hb_000401_010--Hb_002025_270 Hb_011609_040 Hb_011609_040 Hb_131864_030--Hb_011609_040 Hb_005883_070 Hb_005883_070 Hb_131864_030--Hb_005883_070 Hb_002942_090 Hb_002942_090 Hb_131864_030--Hb_002942_090 Hb_131864_030--Hb_000058_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.637371 7.37003 22.6613 9.43889 14.6581 3.06067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.608268 0.717571 0.354743 13.8026 0.773693

CAGE analysis