Hb_005675_070

Information

Type -
Description -
Location Contig5675: 63407-64676
Sequence    

Annotation

kegg
ID mdm:103403888
description uncharacterized LOC103403888
nr
ID KCW47845.1
description hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059A3D3
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01585 PE=4 SV=1
Gene Ontology
ID GO:0005488
description kinesin-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49176: 62612-63153 , PASA_asmbl_49177: 64498-64873
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005675_070 0.0 - - hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
2 Hb_005211_210 0.0826762675 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
3 Hb_158189_010 0.0834917292 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
4 Hb_008689_010 0.0893557654 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
5 Hb_001541_210 0.0961021109 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
6 Hb_003893_130 0.0984802821 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_077774_010 0.1039777392 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
8 Hb_002193_080 0.1052888305 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
9 Hb_000201_010 0.1069346986 - - unnamed protein product [Vitis vinifera]
10 Hb_002043_070 0.1083907937 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
11 Hb_003008_020 0.11222881 - - auxin-responsive family protein [Populus trichocarpa]
12 Hb_000193_180 0.1151637227 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
13 Hb_161103_010 0.1183978663 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_001366_300 0.1248685162 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
15 Hb_000983_130 0.1257129011 - - transcription factor, putative [Ricinus communis]
16 Hb_005741_030 0.1274483792 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
17 Hb_015934_090 0.1294839957 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
18 Hb_000620_040 0.1295825781 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
19 Hb_001902_040 0.1307763994 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001405_170 0.133053659 - - aspartyl protease family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_005675_070 Hb_005675_070 Hb_005211_210 Hb_005211_210 Hb_005675_070--Hb_005211_210 Hb_158189_010 Hb_158189_010 Hb_005675_070--Hb_158189_010 Hb_008689_010 Hb_008689_010 Hb_005675_070--Hb_008689_010 Hb_001541_210 Hb_001541_210 Hb_005675_070--Hb_001541_210 Hb_003893_130 Hb_003893_130 Hb_005675_070--Hb_003893_130 Hb_077774_010 Hb_077774_010 Hb_005675_070--Hb_077774_010 Hb_002193_080 Hb_002193_080 Hb_005211_210--Hb_002193_080 Hb_005211_210--Hb_008689_010 Hb_002043_070 Hb_002043_070 Hb_005211_210--Hb_002043_070 Hb_000201_010 Hb_000201_010 Hb_005211_210--Hb_000201_010 Hb_000434_060 Hb_000434_060 Hb_005211_210--Hb_000434_060 Hb_158189_010--Hb_005211_210 Hb_158189_010--Hb_002043_070 Hb_158189_010--Hb_000201_010 Hb_000983_130 Hb_000983_130 Hb_158189_010--Hb_000983_130 Hb_158189_010--Hb_001541_210 Hb_008689_010--Hb_002193_080 Hb_003008_020 Hb_003008_020 Hb_008689_010--Hb_003008_020 Hb_003050_330 Hb_003050_330 Hb_008689_010--Hb_003050_330 Hb_001902_040 Hb_001902_040 Hb_008689_010--Hb_001902_040 Hb_001405_170 Hb_001405_170 Hb_001541_210--Hb_001405_170 Hb_002890_330 Hb_002890_330 Hb_001541_210--Hb_002890_330 Hb_002053_190 Hb_002053_190 Hb_001541_210--Hb_002053_190 Hb_002960_030 Hb_002960_030 Hb_001541_210--Hb_002960_030 Hb_005741_030 Hb_005741_030 Hb_001541_210--Hb_005741_030 Hb_001541_210--Hb_002043_070 Hb_000620_040 Hb_000620_040 Hb_003893_130--Hb_000620_040 Hb_003893_130--Hb_001541_210 Hb_003032_030 Hb_003032_030 Hb_003893_130--Hb_003032_030 Hb_003893_130--Hb_005741_030 Hb_000193_180 Hb_000193_180 Hb_003893_130--Hb_000193_180 Hb_001366_300 Hb_001366_300 Hb_077774_010--Hb_001366_300 Hb_077774_010--Hb_003008_020 Hb_026124_020 Hb_026124_020 Hb_077774_010--Hb_026124_020 Hb_077774_010--Hb_001902_040 Hb_009522_010 Hb_009522_010 Hb_077774_010--Hb_009522_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.159204 0.138747 0.375992 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.269772

CAGE analysis