Hb_005679_050

Information

Type -
Description -
Location Contig5679: 207665-220298
Sequence    

Annotation

kegg
ID rcu:RCOM_0261010
description Transporter ATM1, mitochondrial precursor, putative (EC:3.6.3.44)
nr
ID AIU41633.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9LVM1
description ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana GN=ABCB25 PE=1 SV=1
trembl
ID A0A097P9Q8
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCB25 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49183: 207483-249435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005679_050 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_002493_020 0.0715975393 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
3 Hb_001700_040 0.0750864766 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
4 Hb_001617_060 0.0787310407 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
5 Hb_003966_030 0.079695249 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
6 Hb_067345_010 0.0820180281 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
7 Hb_001691_120 0.082867709 desease resistance Gene Name: AAA PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
8 Hb_007805_010 0.0847547229 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
9 Hb_004102_140 0.0851561335 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006660_010 0.0853865079 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
11 Hb_004619_050 0.08779838 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
12 Hb_000470_080 0.0893770532 - - Caldesmon, putative [Ricinus communis]
13 Hb_011716_020 0.0898318212 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
14 Hb_000236_310 0.0919639814 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
15 Hb_002974_060 0.092911107 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
16 Hb_000878_010 0.0930989999 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]
17 Hb_003362_070 0.0937320549 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
18 Hb_001322_210 0.0943346104 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
19 Hb_090804_010 0.0944775458 - - ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_002551_070 0.095364039 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]

Gene co-expression network

sample Hb_005679_050 Hb_005679_050 Hb_002493_020 Hb_002493_020 Hb_005679_050--Hb_002493_020 Hb_001700_040 Hb_001700_040 Hb_005679_050--Hb_001700_040 Hb_001617_060 Hb_001617_060 Hb_005679_050--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_005679_050--Hb_003966_030 Hb_067345_010 Hb_067345_010 Hb_005679_050--Hb_067345_010 Hb_001691_120 Hb_001691_120 Hb_005679_050--Hb_001691_120 Hb_001496_070 Hb_001496_070 Hb_002493_020--Hb_001496_070 Hb_004102_140 Hb_004102_140 Hb_002493_020--Hb_004102_140 Hb_004228_010 Hb_004228_010 Hb_002493_020--Hb_004228_010 Hb_172632_080 Hb_172632_080 Hb_002493_020--Hb_172632_080 Hb_004306_080 Hb_004306_080 Hb_002493_020--Hb_004306_080 Hb_000457_260 Hb_000457_260 Hb_001700_040--Hb_000457_260 Hb_000318_510 Hb_000318_510 Hb_001700_040--Hb_000318_510 Hb_000283_070 Hb_000283_070 Hb_001700_040--Hb_000283_070 Hb_000878_010 Hb_000878_010 Hb_001700_040--Hb_000878_010 Hb_000101_240 Hb_000101_240 Hb_001700_040--Hb_000101_240 Hb_000613_080 Hb_000613_080 Hb_001617_060--Hb_000613_080 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_001617_060--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_001617_060--Hb_003362_070 Hb_001617_060--Hb_004102_140 Hb_004935_030 Hb_004935_030 Hb_001617_060--Hb_004935_030 Hb_003966_030--Hb_003362_070 Hb_003966_030--Hb_004102_140 Hb_003966_030--Hb_000613_080 Hb_003044_020 Hb_003044_020 Hb_003966_030--Hb_003044_020 Hb_000347_130 Hb_000347_130 Hb_003966_030--Hb_000347_130 Hb_067345_010--Hb_001617_060 Hb_025012_010 Hb_025012_010 Hb_067345_010--Hb_025012_010 Hb_029142_010 Hb_029142_010 Hb_067345_010--Hb_029142_010 Hb_067345_010--Hb_000347_130 Hb_067345_010--Hb_000613_080 Hb_005054_100 Hb_005054_100 Hb_001691_120--Hb_005054_100 Hb_000169_090 Hb_000169_090 Hb_001691_120--Hb_000169_090 Hb_002811_060 Hb_002811_060 Hb_001691_120--Hb_002811_060 Hb_009535_020 Hb_009535_020 Hb_001691_120--Hb_009535_020 Hb_028639_010 Hb_028639_010 Hb_001691_120--Hb_028639_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.61372 5.42398 3.53312 5.44309 7.51162 16.8872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.67777 3.58437 8.83828 9.13284 6.4449

CAGE analysis