Hb_005679_080

Information

Type -
Description -
Location Contig5679: 252217-258255
Sequence    

Annotation

kegg
ID rcu:RCOM_0260990
description hypothetical protein
nr
ID XP_011041752.1
description PREDICTED: PH-interacting protein-like [Populus euphratica]
swissprot
ID Q9ULD4
description Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2
trembl
ID A0A067LLM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17277 PE=4 SV=1
Gene Ontology
ID GO:0004402
description bromodomain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005679_080 0.0 - - PREDICTED: PH-interacting protein-like [Populus euphratica]
2 Hb_003078_060 0.2487097974 - - 60S ribosomal protein L32, putative [Ricinus communis]
3 Hb_000731_230 0.2586716043 - - PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]
4 Hb_073973_030 0.2913895403 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
5 Hb_003902_060 0.2943049504 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
6 Hb_028341_010 0.2970779078 - - hypothetical protein CICLE_v10026841mg [Citrus clementina]
7 Hb_078568_010 0.2971227129 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
8 Hb_002631_090 0.2984104125 - - -
9 Hb_005694_070 0.3001707711 - - kinase, putative [Ricinus communis]
10 Hb_001431_110 0.3073088253 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
11 Hb_004449_140 0.3106018337 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
12 Hb_001454_070 0.3128522056 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
13 Hb_000365_170 0.316116288 - - PREDICTED: 50S ribosomal protein L17, chloroplastic isoform X3 [Jatropha curcas]
14 Hb_001102_190 0.3188609766 - - PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica]
15 Hb_000975_220 0.3200179949 - - Histone H2B [Medicago truncatula]
16 Hb_001301_240 0.3204420333 - - -
17 Hb_000500_370 0.3237042009 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_171062_010 0.3249786342 - - hypothetical protein VITISV_036059 [Vitis vinifera]
19 Hb_000739_270 0.3278300526 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
20 Hb_052764_040 0.3315420519 - - syntaxin 125 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_005679_080 Hb_005679_080 Hb_003078_060 Hb_003078_060 Hb_005679_080--Hb_003078_060 Hb_000731_230 Hb_000731_230 Hb_005679_080--Hb_000731_230 Hb_073973_030 Hb_073973_030 Hb_005679_080--Hb_073973_030 Hb_003902_060 Hb_003902_060 Hb_005679_080--Hb_003902_060 Hb_028341_010 Hb_028341_010 Hb_005679_080--Hb_028341_010 Hb_078568_010 Hb_078568_010 Hb_005679_080--Hb_078568_010 Hb_000139_490 Hb_000139_490 Hb_003078_060--Hb_000139_490 Hb_157022_030 Hb_157022_030 Hb_003078_060--Hb_157022_030 Hb_004162_230 Hb_004162_230 Hb_003078_060--Hb_004162_230 Hb_000926_230 Hb_000926_230 Hb_003078_060--Hb_000926_230 Hb_001431_110 Hb_001431_110 Hb_003078_060--Hb_001431_110 Hb_000731_230--Hb_003902_060 Hb_000731_230--Hb_078568_010 Hb_075230_010 Hb_075230_010 Hb_000731_230--Hb_075230_010 Hb_001196_040 Hb_001196_040 Hb_000731_230--Hb_001196_040 Hb_149714_010 Hb_149714_010 Hb_000731_230--Hb_149714_010 Hb_100105_010 Hb_100105_010 Hb_000731_230--Hb_100105_010 Hb_016006_010 Hb_016006_010 Hb_073973_030--Hb_016006_010 Hb_000099_090 Hb_000099_090 Hb_073973_030--Hb_000099_090 Hb_005656_080 Hb_005656_080 Hb_073973_030--Hb_005656_080 Hb_000077_120 Hb_000077_120 Hb_073973_030--Hb_000077_120 Hb_003581_210 Hb_003581_210 Hb_073973_030--Hb_003581_210 Hb_011932_010 Hb_011932_010 Hb_073973_030--Hb_011932_010 Hb_003902_060--Hb_078568_010 Hb_003902_060--Hb_100105_010 Hb_003902_060--Hb_075230_010 Hb_003902_060--Hb_000099_090 Hb_000045_280 Hb_000045_280 Hb_003902_060--Hb_000045_280 Hb_001247_280 Hb_001247_280 Hb_028341_010--Hb_001247_280 Hb_001373_110 Hb_001373_110 Hb_028341_010--Hb_001373_110 Hb_000976_260 Hb_000976_260 Hb_028341_010--Hb_000976_260 Hb_003106_080 Hb_003106_080 Hb_028341_010--Hb_003106_080 Hb_005511_100 Hb_005511_100 Hb_028341_010--Hb_005511_100 Hb_000175_090 Hb_000175_090 Hb_028341_010--Hb_000175_090 Hb_170532_010 Hb_170532_010 Hb_078568_010--Hb_170532_010 Hb_078568_010--Hb_000099_090 Hb_078568_010--Hb_075230_010 Hb_078568_010--Hb_016006_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0213302 0.0405664 0.163087 0.0158957 0 0.0663605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0242496 0.0381597 0 0.00759566 0

CAGE analysis