Hb_005686_030

Information

Type -
Description -
Location Contig5686: 54137-56053
Sequence    

Annotation

kegg
ID pmum:103318879
description putative pentatricopeptide repeat-containing protein At3g23330
nr
ID XP_012085751.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9SHZ8
description Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
trembl
ID A0A067JVN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18021 PE=4 SV=1
Gene Ontology
ID GO:0016020
description tetratricopeptide-like isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49199: 55285-55971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005686_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
2 Hb_000019_130 0.0841061119 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
3 Hb_027472_170 0.0886205303 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
4 Hb_119600_040 0.0897918892 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
5 Hb_000935_050 0.1021802188 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
6 Hb_007075_050 0.1046055486 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_004128_180 0.108452549 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000236_140 0.1099577799 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
9 Hb_000574_350 0.1120791737 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
10 Hb_004410_100 0.1204005482 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
11 Hb_000019_060 0.1208829796 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
12 Hb_000172_560 0.1258035915 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
13 Hb_000007_150 0.1266804075 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
14 Hb_001959_160 0.1277278297 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
15 Hb_000297_200 0.1278878262 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
16 Hb_000997_400 0.1287790856 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
17 Hb_003687_100 0.1328290334 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
18 Hb_004807_030 0.1328903401 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
19 Hb_005147_090 0.1346768131 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
20 Hb_025557_030 0.1348139096 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005686_030 Hb_005686_030 Hb_000019_130 Hb_000019_130 Hb_005686_030--Hb_000019_130 Hb_027472_170 Hb_027472_170 Hb_005686_030--Hb_027472_170 Hb_119600_040 Hb_119600_040 Hb_005686_030--Hb_119600_040 Hb_000935_050 Hb_000935_050 Hb_005686_030--Hb_000935_050 Hb_007075_050 Hb_007075_050 Hb_005686_030--Hb_007075_050 Hb_004128_180 Hb_004128_180 Hb_005686_030--Hb_004128_180 Hb_000019_130--Hb_027472_170 Hb_007747_200 Hb_007747_200 Hb_000019_130--Hb_007747_200 Hb_000019_130--Hb_000935_050 Hb_000997_400 Hb_000997_400 Hb_000019_130--Hb_000997_400 Hb_000007_150 Hb_000007_150 Hb_000019_130--Hb_000007_150 Hb_000019_130--Hb_007075_050 Hb_027472_170--Hb_000935_050 Hb_000307_030 Hb_000307_030 Hb_027472_170--Hb_000307_030 Hb_027472_170--Hb_000007_150 Hb_168319_030 Hb_168319_030 Hb_027472_170--Hb_168319_030 Hb_119600_040--Hb_000935_050 Hb_119600_040--Hb_007075_050 Hb_119600_040--Hb_027472_170 Hb_000236_140 Hb_000236_140 Hb_119600_040--Hb_000236_140 Hb_000297_200 Hb_000297_200 Hb_119600_040--Hb_000297_200 Hb_000935_050--Hb_007075_050 Hb_000935_050--Hb_000297_200 Hb_000935_050--Hb_007747_200 Hb_000019_060 Hb_000019_060 Hb_007075_050--Hb_000019_060 Hb_007075_050--Hb_000236_140 Hb_003687_100 Hb_003687_100 Hb_007075_050--Hb_003687_100 Hb_004128_180--Hb_000236_140 Hb_004128_180--Hb_000997_400 Hb_004128_180--Hb_000019_060 Hb_000059_220 Hb_000059_220 Hb_004128_180--Hb_000059_220 Hb_004128_180--Hb_027472_170 Hb_004128_180--Hb_000297_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.967134 1.30189 0.388128 0.366689 1.1573 1.59861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13556 1.88002 4.6539 0.911254 0.235728

CAGE analysis