Hb_005686_040

Information

Type -
Description -
Location Contig5686: 59651-60347
Sequence    

Annotation

kegg
ID rcu:RCOM_1078570
description hypothetical protein
nr
ID XP_002514856.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FFD5
description CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana GN=RIC4 PE=1 SV=1
trembl
ID B9RM87
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1078570 PE=4 SV=1
Gene Ontology
ID GO:0000904
description crib domain-containing protein ric4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49200: 59877-60564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005686_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001051_060 0.0334608931 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
3 Hb_002078_180 0.0379656733 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
4 Hb_000086_490 0.0383796305 - - cellulose synthase [Populus tomentosa]
5 Hb_002835_360 0.0448105573 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
6 Hb_005523_030 0.0465550024 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
7 Hb_015807_090 0.0479952095 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
8 Hb_001935_060 0.049396674 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
9 Hb_003747_160 0.0503663203 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001377_220 0.0512986034 - - dopamine beta-monooxygenase, putative [Ricinus communis]
11 Hb_002662_070 0.057687171 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
12 Hb_001189_080 0.0577296487 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009476_080 0.0591180623 - - BnaA03g18920D [Brassica napus]
14 Hb_000776_090 0.0600996038 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
15 Hb_010166_010 0.0627051824 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
16 Hb_050514_030 0.0665000093 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
17 Hb_000193_320 0.0708701617 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000328_030 0.0720111321 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
19 Hb_000347_060 0.0720653216 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
20 Hb_000836_640 0.0762438485 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]

Gene co-expression network

sample Hb_005686_040 Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_005686_040--Hb_001051_060 Hb_002078_180 Hb_002078_180 Hb_005686_040--Hb_002078_180 Hb_000086_490 Hb_000086_490 Hb_005686_040--Hb_000086_490 Hb_002835_360 Hb_002835_360 Hb_005686_040--Hb_002835_360 Hb_005523_030 Hb_005523_030 Hb_005686_040--Hb_005523_030 Hb_015807_090 Hb_015807_090 Hb_005686_040--Hb_015807_090 Hb_003747_160 Hb_003747_160 Hb_001051_060--Hb_003747_160 Hb_001051_060--Hb_000086_490 Hb_001051_060--Hb_005523_030 Hb_001051_060--Hb_015807_090 Hb_001051_060--Hb_002078_180 Hb_002078_180--Hb_002835_360 Hb_002078_180--Hb_015807_090 Hb_002078_180--Hb_000086_490 Hb_009476_080 Hb_009476_080 Hb_002078_180--Hb_009476_080 Hb_001935_060 Hb_001935_060 Hb_002078_180--Hb_001935_060 Hb_000086_490--Hb_005523_030 Hb_000086_490--Hb_015807_090 Hb_000328_030 Hb_000328_030 Hb_000086_490--Hb_000328_030 Hb_002835_360--Hb_009476_080 Hb_002835_360--Hb_003747_160 Hb_002835_360--Hb_015807_090 Hb_002835_360--Hb_001051_060 Hb_005523_030--Hb_015807_090 Hb_000776_090 Hb_000776_090 Hb_005523_030--Hb_000776_090 Hb_005523_030--Hb_002078_180 Hb_015807_090--Hb_003747_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11112 4.5787 7.58561 104.361 0.168041 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.129944 0 0 0.381273 65.7467

CAGE analysis