Hb_005686_060

Information

Type -
Description -
Location Contig5686: 65649-65963
Sequence    

Annotation

kegg
ID cam:101508199
description uncharacterized LOC101508199
nr
ID XP_004492837.1
description PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
swissprot
ID -
description -
trembl
ID K7MUG8
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49203: 65561-66172
cDNA
(Sanger)
(ID:Location)		 041_K09.ab1: 65563-66140

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005686_060 0.0 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
2 Hb_004705_100 0.0587664916 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
3 Hb_000045_090 0.0696435213 - - PREDICTED: syntaxin-31 [Jatropha curcas]
4 Hb_010172_080 0.0712678386 - - acetylglucosaminyltransferase, putative [Ricinus communis]
5 Hb_009773_020 0.0748208045 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
6 Hb_000510_130 0.0761637548 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
7 Hb_002078_150 0.0781155206 - - protein with unknown function [Ricinus communis]
8 Hb_002774_060 0.0787535604 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
9 Hb_004306_020 0.0794126662 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
10 Hb_020956_020 0.0794535426 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
11 Hb_010504_020 0.080042106 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_002477_330 0.082520924 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
13 Hb_001488_070 0.0839862964 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000103_560 0.0845225671 - - ADP-ribosylation factor, putative [Ricinus communis]
15 Hb_006909_030 0.0845937636 - - 40S ribosomal protein S17B [Hevea brasiliensis]
16 Hb_006922_110 0.0850412527 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
17 Hb_092337_010 0.0850946438 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
18 Hb_000329_030 0.087649857 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
19 Hb_004545_060 0.0881152818 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
20 Hb_009051_030 0.0885204494 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_005686_060 Hb_005686_060 Hb_004705_100 Hb_004705_100 Hb_005686_060--Hb_004705_100 Hb_000045_090 Hb_000045_090 Hb_005686_060--Hb_000045_090 Hb_010172_080 Hb_010172_080 Hb_005686_060--Hb_010172_080 Hb_009773_020 Hb_009773_020 Hb_005686_060--Hb_009773_020 Hb_000510_130 Hb_000510_130 Hb_005686_060--Hb_000510_130 Hb_002078_150 Hb_002078_150 Hb_005686_060--Hb_002078_150 Hb_092337_010 Hb_092337_010 Hb_004705_100--Hb_092337_010 Hb_004705_100--Hb_010172_080 Hb_000700_110 Hb_000700_110 Hb_004705_100--Hb_000700_110 Hb_000692_220 Hb_000692_220 Hb_004705_100--Hb_000692_220 Hb_004705_100--Hb_009773_020 Hb_002774_060 Hb_002774_060 Hb_000045_090--Hb_002774_060 Hb_009557_070 Hb_009557_070 Hb_000045_090--Hb_009557_070 Hb_000329_030 Hb_000329_030 Hb_000045_090--Hb_000329_030 Hb_004545_060 Hb_004545_060 Hb_000045_090--Hb_004545_060 Hb_143398_010 Hb_143398_010 Hb_000045_090--Hb_143398_010 Hb_010172_080--Hb_002774_060 Hb_010172_080--Hb_009773_020 Hb_010172_080--Hb_002078_150 Hb_004324_310 Hb_004324_310 Hb_010172_080--Hb_004324_310 Hb_002030_040 Hb_002030_040 Hb_009773_020--Hb_002030_040 Hb_065525_020 Hb_065525_020 Hb_009773_020--Hb_065525_020 Hb_000103_560 Hb_000103_560 Hb_009773_020--Hb_000103_560 Hb_000840_030 Hb_000840_030 Hb_009773_020--Hb_000840_030 Hb_001105_070 Hb_001105_070 Hb_009773_020--Hb_001105_070 Hb_002301_140 Hb_002301_140 Hb_009773_020--Hb_002301_140 Hb_020956_020 Hb_020956_020 Hb_000510_130--Hb_020956_020 Hb_010504_020 Hb_010504_020 Hb_000510_130--Hb_010504_020 Hb_005305_080 Hb_005305_080 Hb_000510_130--Hb_005305_080 Hb_003092_040 Hb_003092_040 Hb_000510_130--Hb_003092_040 Hb_004223_280 Hb_004223_280 Hb_000510_130--Hb_004223_280 Hb_000953_020 Hb_000953_020 Hb_000510_130--Hb_000953_020 Hb_004128_190 Hb_004128_190 Hb_002078_150--Hb_004128_190 Hb_002078_150--Hb_000103_560 Hb_000398_180 Hb_000398_180 Hb_002078_150--Hb_000398_180 Hb_003847_080 Hb_003847_080 Hb_002078_150--Hb_003847_080 Hb_001377_290 Hb_001377_290 Hb_002078_150--Hb_001377_290 Hb_002078_150--Hb_004545_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
161.332 82.509 55.9537 135.944 98.3459 204.525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
175.308 223.127 196.866 74.2151 39.7941

CAGE analysis