Hb_005686_070

Information

Type -
Description -
Location Contig5686: 77637-78191
Sequence    

Annotation

kegg
ID rcu:RCOM_1078540
description hypothetical protein
nr
ID XP_002514853.1
description hypothetical protein RCOM_1078540 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RM84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1078540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005686_070 0.0 - - hypothetical protein RCOM_1078540 [Ricinus communis]
2 Hb_008725_160 0.2610712246 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004310_010 0.2898431304 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
4 Hb_001205_010 0.3031718314 - - -
5 Hb_159500_010 0.3031764546 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_000313_020 0.3077275939 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
7 Hb_002539_030 0.3260200554 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
8 Hb_076223_020 0.3307484549 - - -
9 Hb_012019_040 0.3457033784 - - -
10 Hb_022680_020 0.3640028565 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
11 Hb_002282_040 0.3684155519 - - hypothetical protein VITISV_030841 [Vitis vinifera]
12 Hb_006831_060 0.3696053458 - - hypothetical protein JCGZ_16419 [Jatropha curcas]
13 Hb_096224_020 0.3742762581 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
14 Hb_003209_050 0.393667651 - - hypothetical protein JCGZ_15683 [Jatropha curcas]
15 Hb_003020_080 0.3991005068 - - -
16 Hb_000169_060 0.4052623917 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000540_210 0.4056908579 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000025_380 0.4059590597 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
19 Hb_003787_050 0.4137354964 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002387_140 0.4168149414 - - PREDICTED: serine/threonine-protein kinase At5g01020-like [Jatropha curcas]

Gene co-expression network

sample Hb_005686_070 Hb_005686_070 Hb_008725_160 Hb_008725_160 Hb_005686_070--Hb_008725_160 Hb_004310_010 Hb_004310_010 Hb_005686_070--Hb_004310_010 Hb_001205_010 Hb_001205_010 Hb_005686_070--Hb_001205_010 Hb_159500_010 Hb_159500_010 Hb_005686_070--Hb_159500_010 Hb_000313_020 Hb_000313_020 Hb_005686_070--Hb_000313_020 Hb_002539_030 Hb_002539_030 Hb_005686_070--Hb_002539_030 Hb_008725_160--Hb_001205_010 Hb_008725_160--Hb_000313_020 Hb_008725_160--Hb_002539_030 Hb_012019_040 Hb_012019_040 Hb_008725_160--Hb_012019_040 Hb_076223_020 Hb_076223_020 Hb_008725_160--Hb_076223_020 Hb_031004_010 Hb_031004_010 Hb_004310_010--Hb_031004_010 Hb_004310_010--Hb_076223_020 Hb_000155_100 Hb_000155_100 Hb_004310_010--Hb_000155_100 Hb_000523_060 Hb_000523_060 Hb_004310_010--Hb_000523_060 Hb_005545_090 Hb_005545_090 Hb_004310_010--Hb_005545_090 Hb_001205_010--Hb_000313_020 Hb_000092_160 Hb_000092_160 Hb_001205_010--Hb_000092_160 Hb_003041_040 Hb_003041_040 Hb_001205_010--Hb_003041_040 Hb_020763_020 Hb_020763_020 Hb_001205_010--Hb_020763_020 Hb_003020_080 Hb_003020_080 Hb_159500_010--Hb_003020_080 Hb_000011_170 Hb_000011_170 Hb_159500_010--Hb_000011_170 Hb_159500_010--Hb_008725_160 Hb_159500_010--Hb_001205_010 Hb_159500_010--Hb_000313_020 Hb_000313_020--Hb_000092_160 Hb_000313_020--Hb_003041_040 Hb_000313_020--Hb_020763_020 Hb_000032_190 Hb_000032_190 Hb_002539_030--Hb_000032_190 Hb_002539_030--Hb_076223_020 Hb_002539_030--Hb_012019_040 Hb_001878_020 Hb_001878_020 Hb_002539_030--Hb_001878_020 Hb_002982_030 Hb_002982_030 Hb_002539_030--Hb_002982_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.083118 0.116765 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113652 0 0 0.0368109 0

CAGE analysis