Hb_005686_090

Information

Type transcription factor
Description TF Family: WRKY
Location Contig5686: 79193-83698
Sequence    

Annotation

kegg
ID rcu:RCOM_1078530
description WRKY transcription factor, putative
nr
ID XP_012085758.1
description PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9FG77
description Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1
trembl
ID M9TNR1
description Uncharacterized protein OS=Jatropha curcas GN=WRKY10 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable wrky transcription factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49204: 79128-81266 , PASA_asmbl_49205: 81435-83353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005686_090 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
2 Hb_005736_020 0.0517674289 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
3 Hb_001304_110 0.0624028281 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
4 Hb_002518_260 0.0664494014 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
5 Hb_029510_050 0.0665026059 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
6 Hb_001008_120 0.0684969752 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
7 Hb_028912_050 0.0708040302 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
8 Hb_011386_010 0.0716884995 - - mitochondrial carrier protein, putative [Ricinus communis]
9 Hb_001999_290 0.0717051951 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
10 Hb_000352_190 0.0727910381 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
11 Hb_004225_050 0.0730859791 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
12 Hb_001004_060 0.0744990781 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
13 Hb_000329_710 0.0750999061 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
14 Hb_002263_020 0.0751822764 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
15 Hb_001157_240 0.0752760641 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
16 Hb_009486_140 0.0756477462 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
17 Hb_001902_030 0.0763700967 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
18 Hb_000792_010 0.0764204935 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
19 Hb_008959_010 0.0770925559 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006649_050 0.0772282921 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]

Gene co-expression network

sample Hb_005686_090 Hb_005686_090 Hb_005736_020 Hb_005736_020 Hb_005686_090--Hb_005736_020 Hb_001304_110 Hb_001304_110 Hb_005686_090--Hb_001304_110 Hb_002518_260 Hb_002518_260 Hb_005686_090--Hb_002518_260 Hb_029510_050 Hb_029510_050 Hb_005686_090--Hb_029510_050 Hb_001008_120 Hb_001008_120 Hb_005686_090--Hb_001008_120 Hb_028912_050 Hb_028912_050 Hb_005686_090--Hb_028912_050 Hb_001157_240 Hb_001157_240 Hb_005736_020--Hb_001157_240 Hb_001999_290 Hb_001999_290 Hb_005736_020--Hb_001999_290 Hb_001004_060 Hb_001004_060 Hb_005736_020--Hb_001004_060 Hb_005736_020--Hb_001008_120 Hb_000204_120 Hb_000204_120 Hb_005736_020--Hb_000204_120 Hb_005582_040 Hb_005582_040 Hb_001304_110--Hb_005582_040 Hb_010068_080 Hb_010068_080 Hb_001304_110--Hb_010068_080 Hb_001304_110--Hb_001999_290 Hb_011386_010 Hb_011386_010 Hb_001304_110--Hb_011386_010 Hb_005054_110 Hb_005054_110 Hb_001304_110--Hb_005054_110 Hb_000041_110 Hb_000041_110 Hb_002518_260--Hb_000041_110 Hb_000792_010 Hb_000792_010 Hb_002518_260--Hb_000792_010 Hb_000028_480 Hb_000028_480 Hb_002518_260--Hb_000028_480 Hb_009486_140 Hb_009486_140 Hb_002518_260--Hb_009486_140 Hb_002518_260--Hb_011386_010 Hb_000329_710 Hb_000329_710 Hb_002518_260--Hb_000329_710 Hb_000254_090 Hb_000254_090 Hb_029510_050--Hb_000254_090 Hb_029879_070 Hb_029879_070 Hb_029510_050--Hb_029879_070 Hb_001357_020 Hb_001357_020 Hb_029510_050--Hb_001357_020 Hb_029510_050--Hb_002518_260 Hb_002685_210 Hb_002685_210 Hb_029510_050--Hb_002685_210 Hb_001008_120--Hb_028912_050 Hb_002263_020 Hb_002263_020 Hb_001008_120--Hb_002263_020 Hb_001008_120--Hb_001157_240 Hb_000720_050 Hb_000720_050 Hb_001008_120--Hb_000720_050 Hb_004225_050 Hb_004225_050 Hb_028912_050--Hb_004225_050 Hb_010710_070 Hb_010710_070 Hb_028912_050--Hb_010710_070 Hb_188063_020 Hb_188063_020 Hb_028912_050--Hb_188063_020 Hb_028912_050--Hb_000028_480 Hb_004963_030 Hb_004963_030 Hb_028912_050--Hb_004963_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.05411 4.89392 3.22365 4.87371 4.7613 5.65753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.74127 5.66296 6.9656 4.55978 8.5043

CAGE analysis