Hb_005687_060

Information

Type -
Description -
Location Contig5687: 60665-82777
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06270g
description POPTRDRAFT_557814; putative cinnamoyl-CoA reductase family protein
nr
ID XP_012065608.1
description PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9S9N9
description Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1
trembl
ID F6HIZ3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0047g00990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49215: 60977-61291 , PASA_asmbl_49216: 65896-66236 , PASA_asmbl_49217: 66818-67089 , PASA_asmbl_49218: 81713-82213
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005687_060 0.0 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
2 Hb_001481_110 0.1000189723 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
3 Hb_000369_050 0.1047428076 - - Ankyrin repeat family protein, putative [Theobroma cacao]
4 Hb_002639_120 0.1220810901 - - unnamed protein product [Vitis vinifera]
5 Hb_007304_100 0.1233919538 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
6 Hb_000702_040 0.1285208103 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
7 Hb_001610_050 0.1314219224 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
8 Hb_004586_230 0.1333409516 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001195_650 0.1360389173 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
10 Hb_003800_010 0.136818323 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
11 Hb_055993_010 0.1392950274 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
12 Hb_103149_010 0.14049896 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
13 Hb_001227_010 0.1450287691 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
14 Hb_003906_150 0.1476652163 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
15 Hb_002025_120 0.1481246736 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
16 Hb_006890_050 0.1484971035 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
17 Hb_012395_260 0.1507293544 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
18 Hb_000604_050 0.1512599888 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
19 Hb_004659_110 0.1519365237 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
20 Hb_009787_020 0.1552111553 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]

Gene co-expression network

sample Hb_005687_060 Hb_005687_060 Hb_001481_110 Hb_001481_110 Hb_005687_060--Hb_001481_110 Hb_000369_050 Hb_000369_050 Hb_005687_060--Hb_000369_050 Hb_002639_120 Hb_002639_120 Hb_005687_060--Hb_002639_120 Hb_007304_100 Hb_007304_100 Hb_005687_060--Hb_007304_100 Hb_000702_040 Hb_000702_040 Hb_005687_060--Hb_000702_040 Hb_001610_050 Hb_001610_050 Hb_005687_060--Hb_001610_050 Hb_001481_110--Hb_000369_050 Hb_001481_110--Hb_001610_050 Hb_006816_540 Hb_006816_540 Hb_001481_110--Hb_006816_540 Hb_001481_110--Hb_007304_100 Hb_000987_080 Hb_000987_080 Hb_001481_110--Hb_000987_080 Hb_103149_010 Hb_103149_010 Hb_000369_050--Hb_103149_010 Hb_000369_050--Hb_001610_050 Hb_000369_050--Hb_000702_040 Hb_005892_010 Hb_005892_010 Hb_000369_050--Hb_005892_010 Hb_006890_050 Hb_006890_050 Hb_002639_120--Hb_006890_050 Hb_151616_010 Hb_151616_010 Hb_002639_120--Hb_151616_010 Hb_002025_120 Hb_002025_120 Hb_002639_120--Hb_002025_120 Hb_001227_010 Hb_001227_010 Hb_002639_120--Hb_001227_010 Hb_000286_210 Hb_000286_210 Hb_002639_120--Hb_000286_210 Hb_002639_120--Hb_000702_040 Hb_000805_330 Hb_000805_330 Hb_007304_100--Hb_000805_330 Hb_008725_190 Hb_008725_190 Hb_007304_100--Hb_008725_190 Hb_003906_150 Hb_003906_150 Hb_007304_100--Hb_003906_150 Hb_055993_010 Hb_055993_010 Hb_007304_100--Hb_055993_010 Hb_000702_040--Hb_001610_050 Hb_004586_230 Hb_004586_230 Hb_000702_040--Hb_004586_230 Hb_001587_220 Hb_001587_220 Hb_000702_040--Hb_001587_220 Hb_000702_040--Hb_006890_050 Hb_000702_040--Hb_005892_010 Hb_021443_020 Hb_021443_020 Hb_001610_050--Hb_021443_020 Hb_001610_050--Hb_005892_010 Hb_001610_050--Hb_002639_120 Hb_001610_050--Hb_006890_050 Hb_001610_050--Hb_001227_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0489813 4.97324 0.44197 5.06032 0.00613261 0.113805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11889 0.093557 0 0.436068 0.299294

CAGE analysis