Hb_005690_010

Information

Type -
Description -
Location Contig5690: 30181-33597
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09350g
description Origin recognition complex subunit 2 family protein
nr
ID XP_011028141.1
description PREDICTED: origin recognition complex subunit 2 [Populus euphratica]
swissprot
ID Q10QS7
description Origin of replication complex subunit 2 OS=Oryza sativa subsp. japonica GN=ORC2 PE=2 SV=1
trembl
ID U5GMP7
description Origin recognition complex subunit 2 family protein OS=Populus trichocarpa GN=POPTR_0003s09350g PE=4 SV=1
Gene Ontology
ID GO:0000808
description origin recognition complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005690_010 0.0 - - PREDICTED: origin recognition complex subunit 2 [Populus euphratica]
2 Hb_015978_060 0.0913953216 - - unnamed protein product [Vitis vinifera]
3 Hb_070739_010 0.0919332001 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
4 Hb_000154_080 0.093616668 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
5 Hb_000003_080 0.0948814788 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
6 Hb_000462_140 0.1034222478 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
7 Hb_002685_190 0.1109401788 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
8 Hb_000853_170 0.1114600129 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
9 Hb_000808_040 0.111502768 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
10 Hb_000109_090 0.1121824237 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
11 Hb_005618_160 0.114907749 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
12 Hb_001278_110 0.114968047 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
13 Hb_001195_280 0.1155251018 - - PREDICTED: uncharacterized protein LOC103928873 isoform X1 [Pyrus x bretschneideri]
14 Hb_029921_040 0.1168805266 - - conserved hypothetical protein [Ricinus communis]
15 Hb_150360_030 0.1177230223 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
16 Hb_002739_050 0.1180694212 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
17 Hb_000714_030 0.1194327251 - - Nucleosome assembly [Gossypium arboreum]
18 Hb_002374_160 0.120270375 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
19 Hb_001221_410 0.1203230941 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
20 Hb_002495_040 0.1203418338 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005690_010 Hb_005690_010 Hb_015978_060 Hb_015978_060 Hb_005690_010--Hb_015978_060 Hb_070739_010 Hb_070739_010 Hb_005690_010--Hb_070739_010 Hb_000154_080 Hb_000154_080 Hb_005690_010--Hb_000154_080 Hb_000003_080 Hb_000003_080 Hb_005690_010--Hb_000003_080 Hb_000462_140 Hb_000462_140 Hb_005690_010--Hb_000462_140 Hb_002685_190 Hb_002685_190 Hb_005690_010--Hb_002685_190 Hb_000661_250 Hb_000661_250 Hb_015978_060--Hb_000661_250 Hb_005618_160 Hb_005618_160 Hb_015978_060--Hb_005618_160 Hb_001259_090 Hb_001259_090 Hb_015978_060--Hb_001259_090 Hb_015978_060--Hb_000154_080 Hb_000300_060 Hb_000300_060 Hb_015978_060--Hb_000300_060 Hb_000808_040 Hb_000808_040 Hb_015978_060--Hb_000808_040 Hb_070739_010--Hb_000462_140 Hb_070739_010--Hb_000808_040 Hb_086639_070 Hb_086639_070 Hb_070739_010--Hb_086639_070 Hb_007919_060 Hb_007919_060 Hb_070739_010--Hb_007919_060 Hb_002495_040 Hb_002495_040 Hb_070739_010--Hb_002495_040 Hb_000092_100 Hb_000092_100 Hb_070739_010--Hb_000092_100 Hb_003878_190 Hb_003878_190 Hb_000154_080--Hb_003878_190 Hb_003551_020 Hb_003551_020 Hb_000154_080--Hb_003551_020 Hb_000154_080--Hb_002685_190 Hb_000007_100 Hb_000007_100 Hb_000154_080--Hb_000007_100 Hb_001221_410 Hb_001221_410 Hb_000154_080--Hb_001221_410 Hb_000116_440 Hb_000116_440 Hb_000003_080--Hb_000116_440 Hb_000342_100 Hb_000342_100 Hb_000003_080--Hb_000342_100 Hb_020581_010 Hb_020581_010 Hb_000003_080--Hb_020581_010 Hb_000272_020 Hb_000272_020 Hb_000003_080--Hb_000272_020 Hb_000220_220 Hb_000220_220 Hb_000003_080--Hb_000220_220 Hb_001842_100 Hb_001842_100 Hb_000003_080--Hb_001842_100 Hb_000462_140--Hb_000661_250 Hb_000462_140--Hb_001259_090 Hb_000462_140--Hb_005618_160 Hb_003010_030 Hb_003010_030 Hb_000462_140--Hb_003010_030 Hb_022250_030 Hb_022250_030 Hb_000462_140--Hb_022250_030 Hb_003599_040 Hb_003599_040 Hb_002685_190--Hb_003599_040 Hb_004204_120 Hb_004204_120 Hb_002685_190--Hb_004204_120 Hb_002963_010 Hb_002963_010 Hb_002685_190--Hb_002963_010 Hb_000465_060 Hb_000465_060 Hb_002685_190--Hb_000465_060 Hb_009954_040 Hb_009954_040 Hb_002685_190--Hb_009954_040 Hb_001278_110 Hb_001278_110 Hb_002685_190--Hb_001278_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46145 1.11826 0.882742 1.0201 2.79625 2.62345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.6738 2.75249 0.92713 0.880211 1.03199

CAGE analysis