Hb_005690_020

Information

Type -
Description -
Location Contig5690: 47723-52317
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08200g
description POPTRDRAFT_762326; hypothetical protein
nr
ID XP_002308144.2
description hypothetical protein POPTR_0006s08200g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HBE3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s08200g PE=4 SV=2
Gene Ontology
ID GO:0005886
description p-hydroxybenzoic acid efflux pump subunit aaeb

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005690_020 0.0 - - hypothetical protein POPTR_0006s08200g [Populus trichocarpa]
2 Hb_080147_090 0.1591158258 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
3 Hb_000331_310 0.1614214043 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
4 Hb_000331_320 0.1648470836 - - -
5 Hb_008667_050 0.1765734121 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
6 Hb_002821_010 0.1777502993 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
7 Hb_073973_110 0.1823580383 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
8 Hb_048197_010 0.184658097 - - -
9 Hb_170305_020 0.1850075532 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
10 Hb_003746_060 0.1896266539 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
11 Hb_001153_200 0.1910770563 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
12 Hb_028486_040 0.1927152619 - - 40S ribosomal protein S14, putative [Ricinus communis]
13 Hb_001047_140 0.1928696824 - - -
14 Hb_008695_160 0.1932730948 - - -
15 Hb_036369_010 0.193735627 - - -
16 Hb_006189_010 0.1956868911 - - -
17 Hb_084934_010 0.1963872366 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
18 Hb_000163_200 0.1967917062 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
19 Hb_000243_010 0.1971787282 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
20 Hb_027472_090 0.1980787861 - - -

Gene co-expression network

sample Hb_005690_020 Hb_005690_020 Hb_080147_090 Hb_080147_090 Hb_005690_020--Hb_080147_090 Hb_000331_310 Hb_000331_310 Hb_005690_020--Hb_000331_310 Hb_000331_320 Hb_000331_320 Hb_005690_020--Hb_000331_320 Hb_008667_050 Hb_008667_050 Hb_005690_020--Hb_008667_050 Hb_002821_010 Hb_002821_010 Hb_005690_020--Hb_002821_010 Hb_073973_110 Hb_073973_110 Hb_005690_020--Hb_073973_110 Hb_000243_010 Hb_000243_010 Hb_080147_090--Hb_000243_010 Hb_000003_350 Hb_000003_350 Hb_080147_090--Hb_000003_350 Hb_048197_010 Hb_048197_010 Hb_080147_090--Hb_048197_010 Hb_005009_020 Hb_005009_020 Hb_080147_090--Hb_005009_020 Hb_075653_020 Hb_075653_020 Hb_080147_090--Hb_075653_020 Hb_084934_010 Hb_084934_010 Hb_000331_310--Hb_084934_010 Hb_002918_280 Hb_002918_280 Hb_000331_310--Hb_002918_280 Hb_004607_140 Hb_004607_140 Hb_000331_310--Hb_004607_140 Hb_000163_200 Hb_000163_200 Hb_000331_310--Hb_000163_200 Hb_010883_210 Hb_010883_210 Hb_000331_310--Hb_010883_210 Hb_003058_070 Hb_003058_070 Hb_000331_310--Hb_003058_070 Hb_000331_320--Hb_008667_050 Hb_003209_030 Hb_003209_030 Hb_000331_320--Hb_003209_030 Hb_001047_140 Hb_001047_140 Hb_000331_320--Hb_001047_140 Hb_000529_240 Hb_000529_240 Hb_000331_320--Hb_000529_240 Hb_000453_210 Hb_000453_210 Hb_000331_320--Hb_000453_210 Hb_008667_050--Hb_001047_140 Hb_008667_050--Hb_000453_210 Hb_008667_050--Hb_003209_030 Hb_008667_050--Hb_000529_240 Hb_120221_010 Hb_120221_010 Hb_002821_010--Hb_120221_010 Hb_000381_080 Hb_000381_080 Hb_002821_010--Hb_000381_080 Hb_002821_010--Hb_084934_010 Hb_027472_090 Hb_027472_090 Hb_002821_010--Hb_027472_090 Hb_170305_020 Hb_170305_020 Hb_002821_010--Hb_170305_020 Hb_000366_100 Hb_000366_100 Hb_002821_010--Hb_000366_100 Hb_000831_060 Hb_000831_060 Hb_073973_110--Hb_000831_060 Hb_005348_080 Hb_005348_080 Hb_073973_110--Hb_005348_080 Hb_000089_130 Hb_000089_130 Hb_073973_110--Hb_000089_130 Hb_000563_590 Hb_000563_590 Hb_073973_110--Hb_000563_590 Hb_001104_120 Hb_001104_120 Hb_073973_110--Hb_001104_120 Hb_001454_330 Hb_001454_330 Hb_073973_110--Hb_001454_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.176209 0.231399 0.0313858 0 0.318562 0.494785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.67026 0.677319 0.132305 0.153995 0

CAGE analysis