Hb_005694_110

Information

Type -
Description -
Location Contig5694: 63225-67142
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa008137mg
description hypothetical protein
nr
ID XP_007218256.1
description hypothetical protein PRUPE_ppa008137mg [Prunus persica]
swissprot
ID P92964
description Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 SV=2
trembl
ID M5XK91
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008137mg PE=4 SV=1
Gene Ontology
ID GO:0005681
description serine arginine-rich splicing factor rs31 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49237: 65882-66339 , PASA_asmbl_49238: 63912-66872 , PASA_asmbl_49239: 65350-65539 , PASA_asmbl_49240: 65624-66864 , PASA_asmbl_49241: 65631-65854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_110 0.0 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
2 Hb_000034_100 0.0615790439 - - dnajc14 protein, putative [Ricinus communis]
3 Hb_005276_210 0.0643833125 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
4 Hb_003010_030 0.0662868906 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
5 Hb_000096_070 0.0715536662 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
6 Hb_000300_060 0.0747516011 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
7 Hb_000462_140 0.0775752933 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
8 Hb_001258_090 0.07764317 - - PREDICTED: protein spt2-like [Jatropha curcas]
9 Hb_000275_170 0.0788895537 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
10 Hb_000853_420 0.0790997494 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_000661_250 0.0798698298 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
12 Hb_000656_400 0.0809891687 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
13 Hb_096563_010 0.0813600915 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
14 Hb_001552_020 0.0814278915 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
15 Hb_002603_120 0.0823772081 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
16 Hb_000920_180 0.0825336187 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
17 Hb_000853_170 0.0827586395 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
18 Hb_000827_070 0.0829468947 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
19 Hb_001006_140 0.0834403751 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
20 Hb_004310_150 0.0841850604 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]

Gene co-expression network

sample Hb_005694_110 Hb_005694_110 Hb_000034_100 Hb_000034_100 Hb_005694_110--Hb_000034_100 Hb_005276_210 Hb_005276_210 Hb_005694_110--Hb_005276_210 Hb_003010_030 Hb_003010_030 Hb_005694_110--Hb_003010_030 Hb_000096_070 Hb_000096_070 Hb_005694_110--Hb_000096_070 Hb_000300_060 Hb_000300_060 Hb_005694_110--Hb_000300_060 Hb_000462_140 Hb_000462_140 Hb_005694_110--Hb_000462_140 Hb_000034_100--Hb_005276_210 Hb_000487_110 Hb_000487_110 Hb_000034_100--Hb_000487_110 Hb_000034_100--Hb_000096_070 Hb_054865_100 Hb_054865_100 Hb_000034_100--Hb_054865_100 Hb_005245_130 Hb_005245_130 Hb_000034_100--Hb_005245_130 Hb_005276_210--Hb_054865_100 Hb_005276_210--Hb_000300_060 Hb_002477_280 Hb_002477_280 Hb_005276_210--Hb_002477_280 Hb_066182_010 Hb_066182_010 Hb_005276_210--Hb_066182_010 Hb_003952_070 Hb_003952_070 Hb_005276_210--Hb_003952_070 Hb_000093_160 Hb_000093_160 Hb_003010_030--Hb_000093_160 Hb_096563_010 Hb_096563_010 Hb_003010_030--Hb_096563_010 Hb_012008_020 Hb_012008_020 Hb_003010_030--Hb_012008_020 Hb_001258_090 Hb_001258_090 Hb_003010_030--Hb_001258_090 Hb_000120_790 Hb_000120_790 Hb_003010_030--Hb_000120_790 Hb_000089_220 Hb_000089_220 Hb_003010_030--Hb_000089_220 Hb_000016_250 Hb_000016_250 Hb_000096_070--Hb_000016_250 Hb_002518_280 Hb_002518_280 Hb_000096_070--Hb_002518_280 Hb_003058_190 Hb_003058_190 Hb_000096_070--Hb_003058_190 Hb_000563_320 Hb_000563_320 Hb_000096_070--Hb_000563_320 Hb_002248_080 Hb_002248_080 Hb_000096_070--Hb_002248_080 Hb_000300_060--Hb_066182_010 Hb_003097_150 Hb_003097_150 Hb_000300_060--Hb_003097_150 Hb_001571_040 Hb_001571_040 Hb_000300_060--Hb_001571_040 Hb_002081_130 Hb_002081_130 Hb_000300_060--Hb_002081_130 Hb_000300_060--Hb_003010_030 Hb_000661_250 Hb_000661_250 Hb_000462_140--Hb_000661_250 Hb_070739_010 Hb_070739_010 Hb_000462_140--Hb_070739_010 Hb_001259_090 Hb_001259_090 Hb_000462_140--Hb_001259_090 Hb_005618_160 Hb_005618_160 Hb_000462_140--Hb_005618_160 Hb_000462_140--Hb_003010_030 Hb_022250_030 Hb_022250_030 Hb_000462_140--Hb_022250_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.1011 40.3253 21.1457 15.9492 54.642 51.9844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.7909 61.8123 33.5904 24.1485 23.8057

CAGE analysis