Hb_005695_020

Information

Type -
Description -
Location Contig5695: 2519-6539
Sequence    

Annotation

kegg
ID rcu:RCOM_1033840
description sulfate transporter, putative
nr
ID XP_012078108.1
description PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
swissprot
ID P53393
description Low affinity sulfate transporter 3 OS=Stylosanthes hamata GN=ST3 PE=2 SV=1
trembl
ID A0A067K912
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11993 PE=4 SV=1
Gene Ontology
ID GO:0016021
description low affinity sulfate transporter 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49258: 2509-3137 , PASA_asmbl_49259: 5979-6120
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005695_020 0.0 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
2 Hb_001277_420 0.1300165481 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
3 Hb_002053_090 0.1344628652 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010381_110 0.1359132745 - - PRA1 family protein [Theobroma cacao]
5 Hb_004032_250 0.1563767573 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000692_230 0.1572145825 - - phospholipase d delta, putative [Ricinus communis]
7 Hb_064047_010 0.157707635 - - conserved hypothetical protein [Ricinus communis]
8 Hb_073171_010 0.1623652451 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
9 Hb_103149_010 0.1670980208 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
10 Hb_012727_010 0.1682752897 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
11 Hb_050898_010 0.1696261906 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
12 Hb_002324_040 0.1699767864 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
13 Hb_060237_010 0.1733142886 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000723_060 0.1741609946 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
15 Hb_006550_010 0.1750237088 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
16 Hb_001976_120 0.1754228393 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
17 Hb_000002_230 0.1756892564 - - RING/U-box superfamily protein [Theobroma cacao]
18 Hb_000137_030 0.1756979758 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
19 Hb_032050_070 0.1758228261 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
20 Hb_001259_100 0.1773953831 - - chloride channel-like family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_005695_020 Hb_005695_020 Hb_001277_420 Hb_001277_420 Hb_005695_020--Hb_001277_420 Hb_002053_090 Hb_002053_090 Hb_005695_020--Hb_002053_090 Hb_010381_110 Hb_010381_110 Hb_005695_020--Hb_010381_110 Hb_004032_250 Hb_004032_250 Hb_005695_020--Hb_004032_250 Hb_000692_230 Hb_000692_230 Hb_005695_020--Hb_000692_230 Hb_064047_010 Hb_064047_010 Hb_005695_020--Hb_064047_010 Hb_006550_010 Hb_006550_010 Hb_001277_420--Hb_006550_010 Hb_002894_040 Hb_002894_040 Hb_001277_420--Hb_002894_040 Hb_000002_230 Hb_000002_230 Hb_001277_420--Hb_000002_230 Hb_183209_020 Hb_183209_020 Hb_001277_420--Hb_183209_020 Hb_001277_420--Hb_002053_090 Hb_050898_010 Hb_050898_010 Hb_002053_090--Hb_050898_010 Hb_002053_090--Hb_000002_230 Hb_000316_080 Hb_000316_080 Hb_002053_090--Hb_000316_080 Hb_140848_010 Hb_140848_010 Hb_002053_090--Hb_140848_010 Hb_000720_060 Hb_000720_060 Hb_002053_090--Hb_000720_060 Hb_010381_110--Hb_064047_010 Hb_001148_040 Hb_001148_040 Hb_010381_110--Hb_001148_040 Hb_001259_100 Hb_001259_100 Hb_010381_110--Hb_001259_100 Hb_010381_110--Hb_004032_250 Hb_003371_260 Hb_003371_260 Hb_010381_110--Hb_003371_260 Hb_002324_050 Hb_002324_050 Hb_004032_250--Hb_002324_050 Hb_001699_050 Hb_001699_050 Hb_004032_250--Hb_001699_050 Hb_002324_040 Hb_002324_040 Hb_004032_250--Hb_002324_040 Hb_004032_250--Hb_064047_010 Hb_004282_040 Hb_004282_040 Hb_004032_250--Hb_004282_040 Hb_000692_230--Hb_004282_040 Hb_000638_180 Hb_000638_180 Hb_000692_230--Hb_000638_180 Hb_009476_160 Hb_009476_160 Hb_000692_230--Hb_009476_160 Hb_000692_230--Hb_002324_040 Hb_103149_010 Hb_103149_010 Hb_000692_230--Hb_103149_010 Hb_002973_030 Hb_002973_030 Hb_000692_230--Hb_002973_030 Hb_000816_050 Hb_000816_050 Hb_064047_010--Hb_000816_050 Hb_005784_020 Hb_005784_020 Hb_064047_010--Hb_005784_020 Hb_002431_090 Hb_002431_090 Hb_064047_010--Hb_002431_090 Hb_064047_010--Hb_002324_040 Hb_000976_340 Hb_000976_340 Hb_064047_010--Hb_000976_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.414528 11.5212 2.08977 11.3963 0.0697045 0.129451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.477979 0.0490563 0.559233 4.4923 0.831137

CAGE analysis