Hb_005695_050

Information

Type -
Description -
Location Contig5695: 43202-51179
Sequence    

Annotation

kegg
ID rcu:RCOM_1033950
description sulfate transporter, putative
nr
ID XP_012078104.1
description PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
swissprot
ID Q9FEP7
description Sulfate transporter 1.3 OS=Arabidopsis thaliana GN=SULTR1;3 PE=2 SV=1
trembl
ID B9RJF8
description Sulfate transporter, putative OS=Ricinus communis GN=RCOM_1033950 PE=4 SV=1
Gene Ontology
ID GO:0005886
description sulfate transporter -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49261: 49451-49719 , PASA_asmbl_49262: 49847-51203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005695_050 0.0 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
2 Hb_008200_010 0.0745326736 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
3 Hb_006187_020 0.0927448082 - - PREDICTED: WAT1-related protein At5g07050-like [Populus euphratica]
4 Hb_002374_070 0.0940887647 - - amino acid transporter, putative [Ricinus communis]
5 Hb_001766_140 0.0951108428 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
6 Hb_027402_110 0.0967166573 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
7 Hb_023536_020 0.0975581644 - - Nicotianamine synthase, putative [Ricinus communis]
8 Hb_000628_100 0.0980621054 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
9 Hb_001584_250 0.098902272 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
10 Hb_003839_060 0.1002250256 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
11 Hb_003777_100 0.1042592585 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
12 Hb_001502_010 0.1046177984 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
13 Hb_000429_080 0.104711199 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003442_020 0.1055415485 - - ccd1, putative [Ricinus communis]
15 Hb_002025_190 0.1059018035 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
16 Hb_000999_060 0.1059839325 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
17 Hb_009851_120 0.1064440309 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
18 Hb_074100_010 0.1075780854 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
19 Hb_000164_250 0.1111094233 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
20 Hb_006590_040 0.1130744929 - - amino acid permease, putative [Ricinus communis]

Gene co-expression network

sample Hb_005695_050 Hb_005695_050 Hb_008200_010 Hb_008200_010 Hb_005695_050--Hb_008200_010 Hb_006187_020 Hb_006187_020 Hb_005695_050--Hb_006187_020 Hb_002374_070 Hb_002374_070 Hb_005695_050--Hb_002374_070 Hb_001766_140 Hb_001766_140 Hb_005695_050--Hb_001766_140 Hb_027402_110 Hb_027402_110 Hb_005695_050--Hb_027402_110 Hb_023536_020 Hb_023536_020 Hb_005695_050--Hb_023536_020 Hb_001502_010 Hb_001502_010 Hb_008200_010--Hb_001502_010 Hb_006590_040 Hb_006590_040 Hb_008200_010--Hb_006590_040 Hb_008200_010--Hb_002374_070 Hb_008200_010--Hb_027402_110 Hb_000007_020 Hb_000007_020 Hb_008200_010--Hb_000007_020 Hb_006187_020--Hb_001766_140 Hb_000429_080 Hb_000429_080 Hb_006187_020--Hb_000429_080 Hb_006187_020--Hb_027402_110 Hb_003442_020 Hb_003442_020 Hb_006187_020--Hb_003442_020 Hb_004157_060 Hb_004157_060 Hb_006187_020--Hb_004157_060 Hb_004125_080 Hb_004125_080 Hb_002374_070--Hb_004125_080 Hb_002411_070 Hb_002411_070 Hb_002374_070--Hb_002411_070 Hb_002374_070--Hb_006590_040 Hb_002374_070--Hb_023536_020 Hb_002116_020 Hb_002116_020 Hb_002374_070--Hb_002116_020 Hb_001766_140--Hb_027402_110 Hb_001766_140--Hb_004157_060 Hb_001766_140--Hb_000429_080 Hb_001766_140--Hb_008200_010 Hb_001675_260 Hb_001675_260 Hb_027402_110--Hb_001675_260 Hb_027402_110--Hb_001502_010 Hb_001255_030 Hb_001255_030 Hb_027402_110--Hb_001255_030 Hb_174644_010 Hb_174644_010 Hb_023536_020--Hb_174644_010 Hb_023536_020--Hb_002411_070 Hb_000373_110 Hb_000373_110 Hb_023536_020--Hb_000373_110 Hb_003839_060 Hb_003839_060 Hb_023536_020--Hb_003839_060 Hb_000433_060 Hb_000433_060 Hb_023536_020--Hb_000433_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.97652 0.783375 14.4107 0 0.048115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.298443

CAGE analysis