Hb_005695_060

Information

Type -
Description -
Location Contig5695: 53267-57201
Sequence    

Annotation

kegg
ID rcu:RCOM_1033960
description gtpase mss1/trme, putative
nr
ID XP_012078102.1
description PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
swissprot
ID Q8KPU2
description tRNA modification GTPase MnmE OS=Synechococcus elongatus (strain PCC 7942) GN=mnmE PE=3 SV=3
trembl
ID A0A067KLQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11991 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable trna modification gtpase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49263: 53446-55071 , PASA_asmbl_49264: 56182-57161
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005695_060 0.0 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
2 Hb_002783_120 0.0537606888 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
3 Hb_001001_020 0.0888803121 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
4 Hb_000976_080 0.0916644575 - - hypothetical protein VITISV_034376 [Vitis vinifera]
5 Hb_000453_190 0.0978280824 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
6 Hb_152453_010 0.0979996642 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
7 Hb_005846_020 0.0994253332 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
8 Hb_004450_060 0.1037445762 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
9 Hb_001160_120 0.104646931 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000948_180 0.1049313655 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
11 Hb_000920_280 0.1075467576 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
12 Hb_003142_070 0.1094921427 - - hypothetical protein F383_14657 [Gossypium arboreum]
13 Hb_007951_100 0.1148039254 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_006623_020 0.1182199999 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
15 Hb_003091_010 0.1188895308 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
16 Hb_006452_160 0.1203656884 - - structural constituent of ribosome, putative [Ricinus communis]
17 Hb_000923_040 0.1205555884 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
18 Hb_001474_030 0.1235794937 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
19 Hb_000042_210 0.1240466457 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
20 Hb_012184_050 0.1242664215 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]

Gene co-expression network

sample Hb_005695_060 Hb_005695_060 Hb_002783_120 Hb_002783_120 Hb_005695_060--Hb_002783_120 Hb_001001_020 Hb_001001_020 Hb_005695_060--Hb_001001_020 Hb_000976_080 Hb_000976_080 Hb_005695_060--Hb_000976_080 Hb_000453_190 Hb_000453_190 Hb_005695_060--Hb_000453_190 Hb_152453_010 Hb_152453_010 Hb_005695_060--Hb_152453_010 Hb_005846_020 Hb_005846_020 Hb_005695_060--Hb_005846_020 Hb_002783_120--Hb_000453_190 Hb_002783_120--Hb_000976_080 Hb_002783_120--Hb_001001_020 Hb_011915_010 Hb_011915_010 Hb_002783_120--Hb_011915_010 Hb_001160_120 Hb_001160_120 Hb_002783_120--Hb_001160_120 Hb_001001_020--Hb_000976_080 Hb_001001_020--Hb_001160_120 Hb_001001_020--Hb_000453_190 Hb_018790_070 Hb_018790_070 Hb_001001_020--Hb_018790_070 Hb_000976_080--Hb_152453_010 Hb_000976_080--Hb_005846_020 Hb_000345_530 Hb_000345_530 Hb_000976_080--Hb_000345_530 Hb_000453_190--Hb_000345_530 Hb_007951_100 Hb_007951_100 Hb_000453_190--Hb_007951_100 Hb_000453_190--Hb_001160_120 Hb_152453_010--Hb_005846_020 Hb_001910_020 Hb_001910_020 Hb_152453_010--Hb_001910_020 Hb_152453_010--Hb_000345_530 Hb_000617_220 Hb_000617_220 Hb_152453_010--Hb_000617_220 Hb_000392_050 Hb_000392_050 Hb_152453_010--Hb_000392_050 Hb_005803_010 Hb_005803_010 Hb_005846_020--Hb_005803_010 Hb_005846_020--Hb_000617_220 Hb_003091_010 Hb_003091_010 Hb_005846_020--Hb_003091_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.4908 7.5565 16.3989 3.17759 21.9673 16.3608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.64633 7.88175 3.98944 3.63898 4.04855

CAGE analysis