Hb_005695_120

Information

Type -
Description -
Location Contig5695: 120295-121499
Sequence    

Annotation

kegg
ID rcu:RCOM_1034130
description Pollen-specific protein C13 precursor, putative
nr
ID XP_002513885.1
description Pollen-specific protein C13 precursor, putative [Ricinus communis]
swissprot
ID Q9LX15
description Protein DOWNSTREAM OF FLC OS=Arabidopsis thaliana GN=DFC PE=2 SV=1
trembl
ID B9RJG6
description Pollen-specific protein C13, putative OS=Ricinus communis GN=RCOM_1034130 PE=4 SV=1
Gene Ontology
ID GO:0005615
description pollen-specific protein c13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49275: 120309-121377
cDNA
(Sanger)
(ID:Location)		 003_F23.ab1: 120374-121320 , 015_B08.ab1: 120319-121237 , 032_K23.ab1: 120328-121196 , 044_F10.ab1: 120374-121313 , 045_C11.ab1: 120330-121295 , 049_G23.ab1: 120322-121187

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005695_120 0.0 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
2 Hb_005054_080 0.0852068485 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
3 Hb_002298_030 0.0907702201 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
4 Hb_052805_010 0.0921194762 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
5 Hb_004032_030 0.0922592452 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
6 Hb_003929_270 0.0932272809 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
7 Hb_000264_110 0.0954833882 - - PREDICTED: trafficking protein particle complex subunit 13 [Jatropha curcas]
8 Hb_002053_140 0.0983272236 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
9 Hb_006618_120 0.0993239862 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
10 Hb_001159_130 0.1017846648 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
11 Hb_001699_100 0.1022770931 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
12 Hb_001427_160 0.1079218871 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_002660_150 0.1119188525 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
14 Hb_187679_010 0.1123565107 - - -
15 Hb_001799_030 0.1143712459 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
16 Hb_000050_200 0.1152527774 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
17 Hb_030736_020 0.1152692999 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000227_190 0.1154471066 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
19 Hb_000127_140 0.1158594984 - - transporter-related family protein [Populus trichocarpa]
20 Hb_012796_020 0.1158909727 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]

Gene co-expression network

sample Hb_005695_120 Hb_005695_120 Hb_005054_080 Hb_005054_080 Hb_005695_120--Hb_005054_080 Hb_002298_030 Hb_002298_030 Hb_005695_120--Hb_002298_030 Hb_052805_010 Hb_052805_010 Hb_005695_120--Hb_052805_010 Hb_004032_030 Hb_004032_030 Hb_005695_120--Hb_004032_030 Hb_003929_270 Hb_003929_270 Hb_005695_120--Hb_003929_270 Hb_000264_110 Hb_000264_110 Hb_005695_120--Hb_000264_110 Hb_000392_340 Hb_000392_340 Hb_005054_080--Hb_000392_340 Hb_005054_080--Hb_004032_030 Hb_005054_080--Hb_002298_030 Hb_000608_050 Hb_000608_050 Hb_005054_080--Hb_000608_050 Hb_005765_050 Hb_005765_050 Hb_005054_080--Hb_005765_050 Hb_006618_120 Hb_006618_120 Hb_002298_030--Hb_006618_120 Hb_002298_030--Hb_004032_030 Hb_154948_040 Hb_154948_040 Hb_002298_030--Hb_154948_040 Hb_000300_630 Hb_000300_630 Hb_002298_030--Hb_000300_630 Hb_000720_040 Hb_000720_040 Hb_052805_010--Hb_000720_040 Hb_011282_060 Hb_011282_060 Hb_052805_010--Hb_011282_060 Hb_001366_370 Hb_001366_370 Hb_052805_010--Hb_001366_370 Hb_000510_300 Hb_000510_300 Hb_052805_010--Hb_000510_300 Hb_000666_100 Hb_000666_100 Hb_052805_010--Hb_000666_100 Hb_000783_010 Hb_000783_010 Hb_052805_010--Hb_000783_010 Hb_000417_100 Hb_000417_100 Hb_004032_030--Hb_000417_100 Hb_004032_030--Hb_000392_340 Hb_004032_030--Hb_003929_270 Hb_002053_140 Hb_002053_140 Hb_003929_270--Hb_002053_140 Hb_086085_020 Hb_086085_020 Hb_003929_270--Hb_086085_020 Hb_000141_080 Hb_000141_080 Hb_003929_270--Hb_000141_080 Hb_000735_110 Hb_000735_110 Hb_003929_270--Hb_000735_110 Hb_030736_020 Hb_030736_020 Hb_003929_270--Hb_030736_020 Hb_003929_270--Hb_006618_120 Hb_000264_110--Hb_003929_270 Hb_000264_110--Hb_002053_140 Hb_000127_140 Hb_000127_140 Hb_000264_110--Hb_000127_140 Hb_000050_200 Hb_000050_200 Hb_000264_110--Hb_000050_200 Hb_003470_090 Hb_003470_090 Hb_000264_110--Hb_003470_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
302.311 118.055 339.972 724.75 259.709 286.126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
337.099 348.253 460.894 277.585 141.886

CAGE analysis