Hb_005699_070

Information

Type transcription factor
Description TF Family: bHLH
Location Contig5699: 72136-74297
Sequence    

Annotation

kegg
ID rcu:RCOM_0553450
description hypothetical protein
nr
ID XP_012079056.1
description PREDICTED: putative transcription factor bHLH107 [Jatropha curcas]
swissprot
ID Q9LET0
description Putative transcription factor bHLH107 OS=Arabidopsis thaliana GN=BHLH107 PE=2 SV=1
trembl
ID A0A067KIZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12250 PE=4 SV=1
Gene Ontology
ID GO:0016491
description transcription factor bhlh30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49280: 72764-73917 , PASA_asmbl_49281: 73942-74297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005699_070 0.0 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH107 [Jatropha curcas]
2 Hb_002216_040 0.0634363456 - - PREDICTED: protein PRD1 [Jatropha curcas]
3 Hb_126643_020 0.0800739351 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
4 Hb_000503_050 0.0824656426 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
5 Hb_002105_040 0.0868830652 - - -
6 Hb_005618_170 0.0916016145 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
7 Hb_002685_010 0.0917497933 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
8 Hb_000445_420 0.0935062592 - - protein transporter, putative [Ricinus communis]
9 Hb_000203_160 0.0935556168 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
10 Hb_002301_140 0.0940903725 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
11 Hb_003092_040 0.0943066136 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
12 Hb_000167_140 0.0946204261 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
13 Hb_000613_140 0.0950141498 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
14 Hb_001377_290 0.0963500488 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
15 Hb_004738_100 0.0965730387 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
16 Hb_012022_030 0.0978309633 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
17 Hb_000139_410 0.098152295 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
18 Hb_005000_210 0.0988071312 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
19 Hb_000754_060 0.0991106513 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
20 Hb_005663_060 0.1014782853 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]

Gene co-expression network

sample Hb_005699_070 Hb_005699_070 Hb_002216_040 Hb_002216_040 Hb_005699_070--Hb_002216_040 Hb_126643_020 Hb_126643_020 Hb_005699_070--Hb_126643_020 Hb_000503_050 Hb_000503_050 Hb_005699_070--Hb_000503_050 Hb_002105_040 Hb_002105_040 Hb_005699_070--Hb_002105_040 Hb_005618_170 Hb_005618_170 Hb_005699_070--Hb_005618_170 Hb_002685_010 Hb_002685_010 Hb_005699_070--Hb_002685_010 Hb_002216_040--Hb_000503_050 Hb_002685_020 Hb_002685_020 Hb_002216_040--Hb_002685_020 Hb_000834_270 Hb_000834_270 Hb_002216_040--Hb_000834_270 Hb_000010_470 Hb_000010_470 Hb_002216_040--Hb_000010_470 Hb_004678_050 Hb_004678_050 Hb_002216_040--Hb_004678_050 Hb_000203_160 Hb_000203_160 Hb_126643_020--Hb_000203_160 Hb_126643_020--Hb_002685_010 Hb_002085_110 Hb_002085_110 Hb_126643_020--Hb_002085_110 Hb_002518_140 Hb_002518_140 Hb_126643_020--Hb_002518_140 Hb_004491_010 Hb_004491_010 Hb_126643_020--Hb_004491_010 Hb_014720_080 Hb_014720_080 Hb_000503_050--Hb_014720_080 Hb_000193_290 Hb_000193_290 Hb_000503_050--Hb_000193_290 Hb_002056_060 Hb_002056_060 Hb_000503_050--Hb_002056_060 Hb_000503_050--Hb_000834_270 Hb_000175_460 Hb_000175_460 Hb_002105_040--Hb_000175_460 Hb_005348_140 Hb_005348_140 Hb_002105_040--Hb_005348_140 Hb_000510_320 Hb_000510_320 Hb_002105_040--Hb_000510_320 Hb_005663_060 Hb_005663_060 Hb_002105_040--Hb_005663_060 Hb_000876_070 Hb_000876_070 Hb_002105_040--Hb_000876_070 Hb_004724_080 Hb_004724_080 Hb_002105_040--Hb_004724_080 Hb_005305_080 Hb_005305_080 Hb_005618_170--Hb_005305_080 Hb_004254_120 Hb_004254_120 Hb_005618_170--Hb_004254_120 Hb_005618_170--Hb_000876_070 Hb_032202_190 Hb_032202_190 Hb_005618_170--Hb_032202_190 Hb_007416_320 Hb_007416_320 Hb_005618_170--Hb_007416_320 Hb_000085_050 Hb_000085_050 Hb_005618_170--Hb_000085_050 Hb_002685_010--Hb_000203_160 Hb_002685_010--Hb_002085_110 Hb_000139_410 Hb_000139_410 Hb_002685_010--Hb_000139_410 Hb_000127_130 Hb_000127_130 Hb_002685_010--Hb_000127_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1275 5.97028 3.8542 5.88985 7.55993 9.22148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8149 13.7547 15.5035 8.56789 2.76107

CAGE analysis