Hb_005699_090

Information

Type -
Description -
Location Contig5699: 98055-100642
Sequence    

Annotation

kegg
ID rcu:RCOM_0554220
description hypothetical protein
nr
ID XP_012079035.1
description PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SGM4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0554220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49282: 97973-98329 , PASA_asmbl_49283: 98377-100673
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005699_090 0.0 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
2 Hb_000035_290 0.0688892088 - - RNA recognition motif-containing family protein [Populus trichocarpa]
3 Hb_001268_350 0.0723040669 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
4 Hb_000563_640 0.0751076378 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
5 Hb_002784_110 0.081639982 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
6 Hb_003544_180 0.0835566401 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
7 Hb_025194_040 0.0835819746 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
8 Hb_004162_090 0.0837459621 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
9 Hb_015807_070 0.0839638318 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
10 Hb_000327_340 0.0848287866 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
11 Hb_000107_500 0.0858626826 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
12 Hb_001638_270 0.0866792481 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
13 Hb_000139_090 0.0871975525 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
14 Hb_004545_140 0.087379196 - - hypothetical protein JCGZ_23405 [Jatropha curcas]
15 Hb_001700_040 0.0874156099 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
16 Hb_006831_110 0.0875571667 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
17 Hb_001247_070 0.0879200863 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
18 Hb_000922_370 0.0886481304 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
19 Hb_002131_020 0.0893317417 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
20 Hb_000890_050 0.0895972972 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]

Gene co-expression network

sample Hb_005699_090 Hb_005699_090 Hb_000035_290 Hb_000035_290 Hb_005699_090--Hb_000035_290 Hb_001268_350 Hb_001268_350 Hb_005699_090--Hb_001268_350 Hb_000563_640 Hb_000563_640 Hb_005699_090--Hb_000563_640 Hb_002784_110 Hb_002784_110 Hb_005699_090--Hb_002784_110 Hb_003544_180 Hb_003544_180 Hb_005699_090--Hb_003544_180 Hb_025194_040 Hb_025194_040 Hb_005699_090--Hb_025194_040 Hb_000166_130 Hb_000166_130 Hb_000035_290--Hb_000166_130 Hb_000343_120 Hb_000343_120 Hb_000035_290--Hb_000343_120 Hb_000035_290--Hb_025194_040 Hb_005496_110 Hb_005496_110 Hb_000035_290--Hb_005496_110 Hb_000395_130 Hb_000395_130 Hb_000035_290--Hb_000395_130 Hb_000035_290--Hb_002784_110 Hb_004718_010 Hb_004718_010 Hb_001268_350--Hb_004718_010 Hb_001268_350--Hb_000035_290 Hb_001247_070 Hb_001247_070 Hb_001268_350--Hb_001247_070 Hb_001268_350--Hb_002784_110 Hb_014267_010 Hb_014267_010 Hb_001268_350--Hb_014267_010 Hb_009620_050 Hb_009620_050 Hb_000563_640--Hb_009620_050 Hb_005321_020 Hb_005321_020 Hb_000563_640--Hb_005321_020 Hb_002615_090 Hb_002615_090 Hb_000563_640--Hb_002615_090 Hb_006831_110 Hb_006831_110 Hb_000563_640--Hb_006831_110 Hb_000922_370 Hb_000922_370 Hb_000563_640--Hb_000922_370 Hb_074969_010 Hb_074969_010 Hb_000563_640--Hb_074969_010 Hb_000446_120 Hb_000446_120 Hb_002784_110--Hb_000446_120 Hb_002784_110--Hb_025194_040 Hb_001913_060 Hb_001913_060 Hb_002784_110--Hb_001913_060 Hb_000788_070 Hb_000788_070 Hb_002784_110--Hb_000788_070 Hb_000183_020 Hb_000183_020 Hb_002784_110--Hb_000183_020 Hb_007416_160 Hb_007416_160 Hb_003544_180--Hb_007416_160 Hb_001439_140 Hb_001439_140 Hb_003544_180--Hb_001439_140 Hb_000890_050 Hb_000890_050 Hb_003544_180--Hb_000890_050 Hb_004143_130 Hb_004143_130 Hb_003544_180--Hb_004143_130 Hb_004156_050 Hb_004156_050 Hb_003544_180--Hb_004156_050 Hb_025194_040--Hb_000343_120 Hb_025194_040--Hb_000166_130 Hb_000540_060 Hb_000540_060 Hb_025194_040--Hb_000540_060 Hb_009476_040 Hb_009476_040 Hb_025194_040--Hb_009476_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.4665 29.8629 8.32231 15.463 30.2933 27.9626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5515 13.1333 23.7049 22.7937 23.1189

CAGE analysis