Hb_005701_020

Information

Type transcription factor
Description TF Family: Orphans
Location Contig5701: 17452-18779
Sequence    

Annotation

kegg
ID rcu:RCOM_1596360
description Salt-tolerance protein, putative
nr
ID XP_012071969.1
description PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
swissprot
ID Q9LQZ7
description B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1
trembl
ID A0A067L270
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04510 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein constans-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49321: 17279-18826
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005701_020 0.0 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
2 Hb_011465_040 0.0581096271 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
3 Hb_002296_060 0.0663799809 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
4 Hb_000134_330 0.0711656527 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
5 Hb_000580_080 0.0796875771 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
6 Hb_001818_020 0.081097715 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
7 Hb_000025_600 0.0822047745 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
8 Hb_001268_140 0.0851301834 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000465_060 0.086072661 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
10 Hb_000417_110 0.0872180517 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
11 Hb_001584_070 0.0873043617 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000970_010 0.0873625132 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
13 Hb_089839_020 0.0888683131 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
14 Hb_000025_530 0.090944501 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
15 Hb_001824_070 0.0923235365 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
16 Hb_003086_100 0.0946018366 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
17 Hb_001300_270 0.0962724968 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
18 Hb_001840_120 0.0979007461 - - PREDICTED: uncharacterized protein LOC104228746 [Nicotiana sylvestris]
19 Hb_000634_050 0.098098144 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
20 Hb_001383_060 0.0991543857 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_005701_020 Hb_005701_020 Hb_011465_040 Hb_011465_040 Hb_005701_020--Hb_011465_040 Hb_002296_060 Hb_002296_060 Hb_005701_020--Hb_002296_060 Hb_000134_330 Hb_000134_330 Hb_005701_020--Hb_000134_330 Hb_000580_080 Hb_000580_080 Hb_005701_020--Hb_000580_080 Hb_001818_020 Hb_001818_020 Hb_005701_020--Hb_001818_020 Hb_000025_600 Hb_000025_600 Hb_005701_020--Hb_000025_600 Hb_000030_100 Hb_000030_100 Hb_011465_040--Hb_000030_100 Hb_009404_020 Hb_009404_020 Hb_011465_040--Hb_009404_020 Hb_000376_050 Hb_000376_050 Hb_011465_040--Hb_000376_050 Hb_002918_200 Hb_002918_200 Hb_011465_040--Hb_002918_200 Hb_000703_140 Hb_000703_140 Hb_011465_040--Hb_000703_140 Hb_002296_060--Hb_000134_330 Hb_002296_060--Hb_000025_600 Hb_002296_060--Hb_001818_020 Hb_000970_010 Hb_000970_010 Hb_002296_060--Hb_000970_010 Hb_001300_270 Hb_001300_270 Hb_002296_060--Hb_001300_270 Hb_001268_140 Hb_001268_140 Hb_000134_330--Hb_001268_140 Hb_000134_330--Hb_000025_600 Hb_000134_330--Hb_001300_270 Hb_000099_060 Hb_000099_060 Hb_000134_330--Hb_000099_060 Hb_008173_090 Hb_008173_090 Hb_000134_330--Hb_008173_090 Hb_000465_060 Hb_000465_060 Hb_000580_080--Hb_000465_060 Hb_089839_020 Hb_089839_020 Hb_000580_080--Hb_089839_020 Hb_001824_070 Hb_001824_070 Hb_000580_080--Hb_001824_070 Hb_001584_070 Hb_001584_070 Hb_000580_080--Hb_001584_070 Hb_001235_210 Hb_001235_210 Hb_000580_080--Hb_001235_210 Hb_001477_110 Hb_001477_110 Hb_000580_080--Hb_001477_110 Hb_001818_020--Hb_000970_010 Hb_000545_150 Hb_000545_150 Hb_001818_020--Hb_000545_150 Hb_001818_020--Hb_001584_070 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001638_260 Hb_001638_260 Hb_001818_020--Hb_001638_260 Hb_000025_600--Hb_001268_140 Hb_000025_600--Hb_001300_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52239 0.638033 0.72021 0.44694 2.64432 2.46211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.38024 6.47735 2.61891 1.6721 0.7104

CAGE analysis