Hb_005701_050

Information

Type -
Description -
Location Contig5701: 37880-40357
Sequence    

Annotation

kegg
ID rcu:RCOM_1596510
description hypothetical protein
nr
ID XP_012071970.1
description PREDICTED: protein LTV1 homolog [Jatropha curcas]
swissprot
ID Q68FR7
description Protein LTV1 homolog OS=Rattus norvegicus GN=Ltv1 PE=2 SV=1
trembl
ID A0A067KR14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04512 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49328: 39063-39840 , PASA_asmbl_49329: 39846-41014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005701_050 0.0 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
2 Hb_000664_120 0.0531494693 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
3 Hb_000958_050 0.0545307179 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
4 Hb_012055_110 0.062049878 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
5 Hb_000996_020 0.0640559171 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
6 Hb_000934_210 0.064072391 - - suppressor of ty, putative [Ricinus communis]
7 Hb_000206_160 0.0642423824 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
8 Hb_000676_330 0.0697251106 - - protein with unknown function [Ricinus communis]
9 Hb_002461_020 0.0706856446 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
10 Hb_007245_020 0.0712181212 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
11 Hb_002357_070 0.0723614063 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
12 Hb_000059_230 0.072588459 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
13 Hb_170077_010 0.0736538025 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
14 Hb_000003_410 0.0750109707 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
15 Hb_004659_090 0.0752391296 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
16 Hb_000358_220 0.0753505177 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
17 Hb_000035_100 0.075765616 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_006478_030 0.0761891092 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
19 Hb_001008_070 0.0774253679 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
20 Hb_000270_190 0.0774464816 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005701_050 Hb_005701_050 Hb_000664_120 Hb_000664_120 Hb_005701_050--Hb_000664_120 Hb_000958_050 Hb_000958_050 Hb_005701_050--Hb_000958_050 Hb_012055_110 Hb_012055_110 Hb_005701_050--Hb_012055_110 Hb_000996_020 Hb_000996_020 Hb_005701_050--Hb_000996_020 Hb_000934_210 Hb_000934_210 Hb_005701_050--Hb_000934_210 Hb_000206_160 Hb_000206_160 Hb_005701_050--Hb_000206_160 Hb_000826_070 Hb_000826_070 Hb_000664_120--Hb_000826_070 Hb_001999_140 Hb_001999_140 Hb_000664_120--Hb_001999_140 Hb_000664_120--Hb_000934_210 Hb_000035_100 Hb_000035_100 Hb_000664_120--Hb_000035_100 Hb_002461_020 Hb_002461_020 Hb_000664_120--Hb_002461_020 Hb_000003_410 Hb_000003_410 Hb_000958_050--Hb_000003_410 Hb_000958_050--Hb_000934_210 Hb_000645_130 Hb_000645_130 Hb_000958_050--Hb_000645_130 Hb_002007_110 Hb_002007_110 Hb_000958_050--Hb_002007_110 Hb_000958_050--Hb_012055_110 Hb_012055_110--Hb_002007_110 Hb_000066_150 Hb_000066_150 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_000445_060 Hb_000445_060 Hb_000996_020--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_000996_020--Hb_002461_020 Hb_000529_060 Hb_000529_060 Hb_000996_020--Hb_000529_060 Hb_000661_120 Hb_000661_120 Hb_000996_020--Hb_000661_120 Hb_005333_140 Hb_005333_140 Hb_000996_020--Hb_005333_140 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_012244_020 Hb_012244_020 Hb_000934_210--Hb_012244_020 Hb_123531_010 Hb_123531_010 Hb_000934_210--Hb_123531_010 Hb_000934_210--Hb_002007_110 Hb_000934_210--Hb_002357_070 Hb_027506_010 Hb_027506_010 Hb_000206_160--Hb_027506_010 Hb_000676_330 Hb_000676_330 Hb_000206_160--Hb_000676_330 Hb_003758_010 Hb_003758_010 Hb_000206_160--Hb_003758_010 Hb_000206_160--Hb_000996_020 Hb_000206_160--Hb_000373_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52225 5.47969 4.08602 3.45148 3.39002 2.4422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1076 1.88812 2.19438 4.18294 5.67502

CAGE analysis