Hb_005701_070

Information

Type -
Description -
Location Contig5701: 44812-47205
Sequence    

Annotation

kegg
ID rcu:RCOM_1596540
description tetratricopeptide repeat protein, tpr, putative
nr
ID XP_012071972.1
description PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
swissprot
ID O23052
description Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1
trembl
ID A0A067L3C1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04514 PE=4 SV=1
Gene Ontology
ID GO:0005509
description uncharacterized tpr repeat-containing protein at1g05150-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49331: 44508-47679 , PASA_asmbl_49332: 43267-45126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005701_070 0.0 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
2 Hb_000446_120 0.0531952519 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
3 Hb_030627_060 0.0747245268 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
4 Hb_002400_240 0.0762471382 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
5 Hb_002784_110 0.0768790662 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
6 Hb_000406_020 0.0800562086 - - -
7 Hb_025194_040 0.0822542213 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
8 Hb_000540_060 0.0836313775 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
9 Hb_001913_060 0.0855554124 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
10 Hb_007426_130 0.0887593331 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
11 Hb_000183_020 0.0893202865 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
12 Hb_032631_040 0.0918234728 - - PREDICTED: uncharacterized protein LOC105638769 [Jatropha curcas]
13 Hb_009476_040 0.0921763129 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000922_370 0.0928474014 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
15 Hb_117552_010 0.0943041017 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_102269_010 0.0959505174 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
17 Hb_002329_040 0.0961670768 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
18 Hb_001235_230 0.0965147779 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
19 Hb_000206_040 0.0970862381 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
20 Hb_003044_020 0.0974259451 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]

Gene co-expression network

sample Hb_005701_070 Hb_005701_070 Hb_000446_120 Hb_000446_120 Hb_005701_070--Hb_000446_120 Hb_030627_060 Hb_030627_060 Hb_005701_070--Hb_030627_060 Hb_002400_240 Hb_002400_240 Hb_005701_070--Hb_002400_240 Hb_002784_110 Hb_002784_110 Hb_005701_070--Hb_002784_110 Hb_000406_020 Hb_000406_020 Hb_005701_070--Hb_000406_020 Hb_025194_040 Hb_025194_040 Hb_005701_070--Hb_025194_040 Hb_000446_120--Hb_002784_110 Hb_000446_120--Hb_030627_060 Hb_002329_040 Hb_002329_040 Hb_000446_120--Hb_002329_040 Hb_000740_100 Hb_000740_100 Hb_000446_120--Hb_000740_100 Hb_000446_120--Hb_025194_040 Hb_002044_170 Hb_002044_170 Hb_030627_060--Hb_002044_170 Hb_005731_090 Hb_005731_090 Hb_030627_060--Hb_005731_090 Hb_030627_060--Hb_002329_040 Hb_148909_030 Hb_148909_030 Hb_030627_060--Hb_148909_030 Hb_001235_230 Hb_001235_230 Hb_030627_060--Hb_001235_230 Hb_001913_060 Hb_001913_060 Hb_002400_240--Hb_001913_060 Hb_002301_080 Hb_002301_080 Hb_002400_240--Hb_002301_080 Hb_116929_010 Hb_116929_010 Hb_002400_240--Hb_116929_010 Hb_002400_240--Hb_030627_060 Hb_117552_010 Hb_117552_010 Hb_002400_240--Hb_117552_010 Hb_002784_110--Hb_025194_040 Hb_002784_110--Hb_001913_060 Hb_000788_070 Hb_000788_070 Hb_002784_110--Hb_000788_070 Hb_000035_290 Hb_000035_290 Hb_002784_110--Hb_000035_290 Hb_000183_020 Hb_000183_020 Hb_002784_110--Hb_000183_020 Hb_000406_020--Hb_001235_230 Hb_003119_080 Hb_003119_080 Hb_000406_020--Hb_003119_080 Hb_000086_690 Hb_000086_690 Hb_000406_020--Hb_000086_690 Hb_000960_100 Hb_000960_100 Hb_000406_020--Hb_000960_100 Hb_000406_020--Hb_002784_110 Hb_000406_020--Hb_000446_120 Hb_025194_040--Hb_000035_290 Hb_000343_120 Hb_000343_120 Hb_025194_040--Hb_000343_120 Hb_000166_130 Hb_000166_130 Hb_025194_040--Hb_000166_130 Hb_000540_060 Hb_000540_060 Hb_025194_040--Hb_000540_060 Hb_009476_040 Hb_009476_040 Hb_025194_040--Hb_009476_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.4738 60.8067 13.9037 33.9343 58.3321 71.4554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.8927 11.9504 31.5878 45.6531 54.7449

CAGE analysis