Hb_005711_030

Information

Type -
Description -
Location Contig5711: 60292-61185
Sequence    

Annotation

kegg
ID rcu:RCOM_0460020
description hypothetical protein
nr
ID XP_002528226.1
description hypothetical protein RCOM_0460020 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQF7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0460020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49365: 61125-61496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005711_030 0.0 - - hypothetical protein RCOM_0460020 [Ricinus communis]
2 Hb_000813_070 0.069268864 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001289_070 0.0704571341 - - PREDICTED: protein YLS9-like [Jatropha curcas]
4 Hb_133974_010 0.0710876815 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
5 Hb_000103_440 0.0743959955 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
6 Hb_004650_120 0.0775688691 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
7 Hb_000017_180 0.0789625804 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
8 Hb_002151_070 0.0795213326 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
9 Hb_001140_290 0.0802534849 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
10 Hb_000364_090 0.0819415148 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
11 Hb_004650_110 0.083986776 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
12 Hb_000368_050 0.0852830332 - - beta-galactosidase, putative [Ricinus communis]
13 Hb_000676_230 0.0852992789 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
14 Hb_005000_150 0.0889475028 - - conserved hypothetical protein [Ricinus communis]
15 Hb_182869_010 0.0891413615 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_020375_010 0.0900026509 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
17 Hb_001511_220 0.0903659134 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
18 Hb_002809_180 0.0935573788 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
19 Hb_001512_130 0.0950680671 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
20 Hb_002973_050 0.0954246278 - - hypothetical protein JCGZ_06491 [Jatropha curcas]

Gene co-expression network

sample Hb_005711_030 Hb_005711_030 Hb_000813_070 Hb_000813_070 Hb_005711_030--Hb_000813_070 Hb_001289_070 Hb_001289_070 Hb_005711_030--Hb_001289_070 Hb_133974_010 Hb_133974_010 Hb_005711_030--Hb_133974_010 Hb_000103_440 Hb_000103_440 Hb_005711_030--Hb_000103_440 Hb_004650_120 Hb_004650_120 Hb_005711_030--Hb_004650_120 Hb_000017_180 Hb_000017_180 Hb_005711_030--Hb_000017_180 Hb_002151_070 Hb_002151_070 Hb_000813_070--Hb_002151_070 Hb_000813_070--Hb_001289_070 Hb_020375_010 Hb_020375_010 Hb_000813_070--Hb_020375_010 Hb_001279_400 Hb_001279_400 Hb_000813_070--Hb_001279_400 Hb_001688_050 Hb_001688_050 Hb_000813_070--Hb_001688_050 Hb_015807_130 Hb_015807_130 Hb_001289_070--Hb_015807_130 Hb_005000_150 Hb_005000_150 Hb_001289_070--Hb_005000_150 Hb_003152_020 Hb_003152_020 Hb_001289_070--Hb_003152_020 Hb_001289_070--Hb_002151_070 Hb_002973_050 Hb_002973_050 Hb_133974_010--Hb_002973_050 Hb_000676_230 Hb_000676_230 Hb_133974_010--Hb_000676_230 Hb_004917_020 Hb_004917_020 Hb_133974_010--Hb_004917_020 Hb_147006_010 Hb_147006_010 Hb_133974_010--Hb_147006_010 Hb_004032_290 Hb_004032_290 Hb_133974_010--Hb_004032_290 Hb_003058_240 Hb_003058_240 Hb_000103_440--Hb_003058_240 Hb_001140_290 Hb_001140_290 Hb_000103_440--Hb_001140_290 Hb_000103_440--Hb_002151_070 Hb_002809_180 Hb_002809_180 Hb_000103_440--Hb_002809_180 Hb_000103_440--Hb_003152_020 Hb_000009_280 Hb_000009_280 Hb_004650_120--Hb_000009_280 Hb_001511_220 Hb_001511_220 Hb_004650_120--Hb_001511_220 Hb_004650_120--Hb_000676_230 Hb_004650_120--Hb_004032_290 Hb_001104_060 Hb_001104_060 Hb_004650_120--Hb_001104_060 Hb_007185_050 Hb_007185_050 Hb_004650_120--Hb_007185_050 Hb_002062_010 Hb_002062_010 Hb_000017_180--Hb_002062_010 Hb_005183_050 Hb_005183_050 Hb_000017_180--Hb_005183_050 Hb_003417_050 Hb_003417_050 Hb_000017_180--Hb_003417_050 Hb_005656_120 Hb_005656_120 Hb_000017_180--Hb_005656_120 Hb_128986_010 Hb_128986_010 Hb_000017_180--Hb_128986_010 Hb_007483_090 Hb_007483_090 Hb_000017_180--Hb_007483_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.281121 0.771622 3.32033 0 0.022447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.111113 2.42089

CAGE analysis