Hb_005714_040

Information

Type -
Description -
Location Contig5714: 23019-28976
Sequence    

Annotation

kegg
ID rcu:RCOM_0290900
description hypothetical protein
nr
ID XP_002533028.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8W3M6
description Ubiquitin-like domain-containing CTD phosphatase OS=Arabidopsis thaliana GN=At4g06599 PE=2 SV=1
trembl
ID B9T459
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0290900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49370: 29049-29412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005714_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000183_070 0.063721873 - - -
3 Hb_005389_140 0.0729826132 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
4 Hb_005015_010 0.0946270096 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
5 Hb_000590_090 0.0991521684 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
6 Hb_006452_190 0.1034642519 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
7 Hb_000188_190 0.1088939741 - - -
8 Hb_004374_010 0.112246681 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
9 Hb_001437_300 0.1133733895 - - -
10 Hb_004813_010 0.1150384084 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_001514_020 0.1171140895 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
12 Hb_006501_150 0.117314425 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007017_060 0.1183634634 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
14 Hb_000015_010 0.1184130791 - - -
15 Hb_001158_040 0.1192251863 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
16 Hb_002400_390 0.1195568736 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
17 Hb_143766_090 0.1196030563 - - 60S ribosomal protein L31B [Hevea brasiliensis]
18 Hb_000062_230 0.1214914195 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
19 Hb_000976_270 0.1266253802 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
20 Hb_002044_090 0.1285985904 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005714_040 Hb_005714_040 Hb_000183_070 Hb_000183_070 Hb_005714_040--Hb_000183_070 Hb_005389_140 Hb_005389_140 Hb_005714_040--Hb_005389_140 Hb_005015_010 Hb_005015_010 Hb_005714_040--Hb_005015_010 Hb_000590_090 Hb_000590_090 Hb_005714_040--Hb_000590_090 Hb_006452_190 Hb_006452_190 Hb_005714_040--Hb_006452_190 Hb_000188_190 Hb_000188_190 Hb_005714_040--Hb_000188_190 Hb_001437_300 Hb_001437_300 Hb_000183_070--Hb_001437_300 Hb_000183_070--Hb_005015_010 Hb_006501_150 Hb_006501_150 Hb_000183_070--Hb_006501_150 Hb_000183_070--Hb_006452_190 Hb_000183_070--Hb_005389_140 Hb_005389_140--Hb_000590_090 Hb_000062_230 Hb_000062_230 Hb_005389_140--Hb_000062_230 Hb_004813_010 Hb_004813_010 Hb_005389_140--Hb_004813_010 Hb_004374_010 Hb_004374_010 Hb_005389_140--Hb_004374_010 Hb_005015_010--Hb_000188_190 Hb_004096_170 Hb_004096_170 Hb_005015_010--Hb_004096_170 Hb_009801_010 Hb_009801_010 Hb_005015_010--Hb_009801_010 Hb_005015_010--Hb_004374_010 Hb_001386_130 Hb_001386_130 Hb_000590_090--Hb_001386_130 Hb_000680_150 Hb_000680_150 Hb_000590_090--Hb_000680_150 Hb_000714_020 Hb_000714_020 Hb_000590_090--Hb_000714_020 Hb_001454_390 Hb_001454_390 Hb_000590_090--Hb_001454_390 Hb_006452_190--Hb_001437_300 Hb_005271_070 Hb_005271_070 Hb_006452_190--Hb_005271_070 Hb_006452_190--Hb_005015_010 Hb_011537_040 Hb_011537_040 Hb_006452_190--Hb_011537_040 Hb_000015_010 Hb_000015_010 Hb_000188_190--Hb_000015_010 Hb_000188_190--Hb_004374_010 Hb_004032_460 Hb_004032_460 Hb_000188_190--Hb_004032_460 Hb_002728_020 Hb_002728_020 Hb_000188_190--Hb_002728_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.32474 1.72295 1.2166 0.327557 8.07812 3.49438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.81878 3.79067 1.85141 0.818778 0.561861

CAGE analysis