Hb_005714_100

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig5714: 82580-88809
Sequence    

Annotation

kegg
ID vvi:100853942
description putative disease resistance RPP13-like protein 1
nr
ID XP_010659182.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A5C669
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014536 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49372: 84758-88735 , PASA_asmbl_49373: 84758-88762 , PASA_asmbl_49374: 87998-88652 , PASA_asmbl_49375: 88042-88652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005714_100 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
2 Hb_000009_200 0.0735998574 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
3 Hb_000035_050 0.0786790611 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
4 Hb_008112_010 0.1032567827 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
5 Hb_002875_070 0.1040811712 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
6 Hb_056196_060 0.1063390744 - - hexokinase [Manihot esculenta]
7 Hb_001376_010 0.1129973353 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
8 Hb_013358_020 0.1157948784 - - ccr4-associated factor, putative [Ricinus communis]
9 Hb_018790_050 0.1165457867 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
10 Hb_004117_170 0.1168753546 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
11 Hb_008248_020 0.1174654984 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]
12 Hb_001329_080 0.1191254847 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
13 Hb_000069_330 0.1212709639 - - protein with unknown function [Ricinus communis]
14 Hb_002122_030 0.1226354054 - - -
15 Hb_001246_160 0.1229893023 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
16 Hb_000749_070 0.1255936617 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
17 Hb_000056_080 0.1270165195 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
18 Hb_000200_170 0.127124892 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
19 Hb_003849_190 0.1272726252 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
20 Hb_002849_070 0.1280250107 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005714_100 Hb_005714_100 Hb_000009_200 Hb_000009_200 Hb_005714_100--Hb_000009_200 Hb_000035_050 Hb_000035_050 Hb_005714_100--Hb_000035_050 Hb_008112_010 Hb_008112_010 Hb_005714_100--Hb_008112_010 Hb_002875_070 Hb_002875_070 Hb_005714_100--Hb_002875_070 Hb_056196_060 Hb_056196_060 Hb_005714_100--Hb_056196_060 Hb_001376_010 Hb_001376_010 Hb_005714_100--Hb_001376_010 Hb_000009_200--Hb_008112_010 Hb_001246_160 Hb_001246_160 Hb_000009_200--Hb_001246_160 Hb_000069_330 Hb_000069_330 Hb_000009_200--Hb_000069_330 Hb_000009_200--Hb_000035_050 Hb_000009_200--Hb_056196_060 Hb_004117_170 Hb_004117_170 Hb_000035_050--Hb_004117_170 Hb_013358_020 Hb_013358_020 Hb_000035_050--Hb_013358_020 Hb_018790_050 Hb_018790_050 Hb_000035_050--Hb_018790_050 Hb_000035_050--Hb_056196_060 Hb_000035_050--Hb_001376_010 Hb_008112_010--Hb_056196_060 Hb_008112_010--Hb_000035_050 Hb_001085_300 Hb_001085_300 Hb_008112_010--Hb_001085_300 Hb_000735_140 Hb_000735_140 Hb_008112_010--Hb_000735_140 Hb_002875_070--Hb_000035_050 Hb_002759_260 Hb_002759_260 Hb_002875_070--Hb_002759_260 Hb_003849_190 Hb_003849_190 Hb_002875_070--Hb_003849_190 Hb_001133_010 Hb_001133_010 Hb_002875_070--Hb_001133_010 Hb_002875_070--Hb_000009_200 Hb_003670_030 Hb_003670_030 Hb_056196_060--Hb_003670_030 Hb_056196_060--Hb_018790_050 Hb_000638_280 Hb_000638_280 Hb_001376_010--Hb_000638_280 Hb_001376_010--Hb_004117_170 Hb_004108_240 Hb_004108_240 Hb_001376_010--Hb_004108_240 Hb_002965_050 Hb_002965_050 Hb_001376_010--Hb_002965_050 Hb_000156_090 Hb_000156_090 Hb_001376_010--Hb_000156_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1027 123.553 74.5472 94.8862 8.01582 12.2515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8112 18.2807 11.8931 19.5554 25.1245

CAGE analysis