Hb_005714_130

Information

Type transcription factor
Description TF Family: C2H2
Location Contig5714: 111812-114114
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23050g
description zinc finger family protein
nr
ID ABK96475.1
description unknown [Populus trichocarpa x Populus deltoides]
swissprot
ID Q2V3L3
description Uncharacterized zinc finger protein At4g06634 OS=Arabidopsis thaliana GN=At4g06634 PE=1 SV=1
trembl
ID A9PJC2
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID GO:0003676
description uncharacterized zinc finger protein at4g06634

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49376: 113544-113840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005714_130 0.0 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
2 Hb_010565_010 0.1158724594 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
3 Hb_002007_180 0.1168205456 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
4 Hb_001767_120 0.1200533199 - - -
5 Hb_041392_010 0.1352329983 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
6 Hb_005367_010 0.1402691924 - - -
7 Hb_128998_010 0.1427042144 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
8 Hb_136731_010 0.1428434798 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
9 Hb_000176_120 0.142856655 - - seryl-tRNA synthetase, putative [Ricinus communis]
10 Hb_001752_040 0.1444737977 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
11 Hb_002374_020 0.144844422 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
12 Hb_076875_020 0.145724264 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
13 Hb_000486_060 0.1464705112 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
14 Hb_002687_080 0.1469721659 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
15 Hb_150360_010 0.1471610783 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
16 Hb_140291_010 0.1475291081 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
17 Hb_000080_060 0.1477941597 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
18 Hb_000198_070 0.1482518766 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
19 Hb_003656_140 0.1485523187 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
20 Hb_004934_070 0.149279434 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]

Gene co-expression network

sample Hb_005714_130 Hb_005714_130 Hb_010565_010 Hb_010565_010 Hb_005714_130--Hb_010565_010 Hb_002007_180 Hb_002007_180 Hb_005714_130--Hb_002007_180 Hb_001767_120 Hb_001767_120 Hb_005714_130--Hb_001767_120 Hb_041392_010 Hb_041392_010 Hb_005714_130--Hb_041392_010 Hb_005367_010 Hb_005367_010 Hb_005714_130--Hb_005367_010 Hb_128998_010 Hb_128998_010 Hb_005714_130--Hb_128998_010 Hb_002067_120 Hb_002067_120 Hb_010565_010--Hb_002067_120 Hb_001386_140 Hb_001386_140 Hb_010565_010--Hb_001386_140 Hb_000606_080 Hb_000606_080 Hb_010565_010--Hb_000606_080 Hb_005023_030 Hb_005023_030 Hb_010565_010--Hb_005023_030 Hb_004934_070 Hb_004934_070 Hb_010565_010--Hb_004934_070 Hb_140291_010 Hb_140291_010 Hb_002007_180--Hb_140291_010 Hb_005260_020 Hb_005260_020 Hb_002007_180--Hb_005260_020 Hb_002737_070 Hb_002737_070 Hb_002007_180--Hb_002737_070 Hb_000812_040 Hb_000812_040 Hb_002007_180--Hb_000812_040 Hb_000080_060 Hb_000080_060 Hb_002007_180--Hb_000080_060 Hb_001752_040 Hb_001752_040 Hb_001767_120--Hb_001752_040 Hb_002508_010 Hb_002508_010 Hb_001767_120--Hb_002508_010 Hb_001767_120--Hb_128998_010 Hb_121467_010 Hb_121467_010 Hb_001767_120--Hb_121467_010 Hb_171788_010 Hb_171788_010 Hb_001767_120--Hb_171788_010 Hb_033312_140 Hb_033312_140 Hb_041392_010--Hb_033312_140 Hb_003656_140 Hb_003656_140 Hb_041392_010--Hb_003656_140 Hb_023001_050 Hb_023001_050 Hb_041392_010--Hb_023001_050 Hb_041392_010--Hb_000606_080 Hb_150204_010 Hb_150204_010 Hb_041392_010--Hb_150204_010 Hb_150360_010 Hb_150360_010 Hb_041392_010--Hb_150360_010 Hb_001377_180 Hb_001377_180 Hb_005367_010--Hb_001377_180 Hb_152554_010 Hb_152554_010 Hb_005367_010--Hb_152554_010 Hb_136731_010 Hb_136731_010 Hb_005367_010--Hb_136731_010 Hb_007441_270 Hb_007441_270 Hb_005367_010--Hb_007441_270 Hb_003861_040 Hb_003861_040 Hb_005367_010--Hb_003861_040 Hb_000176_120 Hb_000176_120 Hb_005367_010--Hb_000176_120 Hb_112047_010 Hb_112047_010 Hb_128998_010--Hb_112047_010 Hb_010504_030 Hb_010504_030 Hb_128998_010--Hb_010504_030 Hb_006663_090 Hb_006663_090 Hb_128998_010--Hb_006663_090 Hb_000429_250 Hb_000429_250 Hb_128998_010--Hb_000429_250 Hb_000007_460 Hb_000007_460 Hb_128998_010--Hb_000007_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.8263 1.93459 1.61251 5.25146 4.06879 14.0848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.97989 5.29733 1.0222 2.53441 1.57646

CAGE analysis