Hb_005714_140

Information

Type -
Description -
Location Contig5714: 116160-117260
Sequence    

Annotation

kegg
ID rcu:RCOM_1375290
description Protein kinase APK1B, chloroplast precursor, putative
nr
ID XP_002529012.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9FMY3
description Serine/threonine-protein kinase-like protein At5g23170 OS=Arabidopsis thaliana GN=At5g23170 PE=2 SV=1
trembl
ID B9SSP3
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_1375290 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase-like protein at5g23170

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005714_140 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_000260_130 0.0861028001 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
3 Hb_002267_030 0.0924228675 - - hypothetical protein JCGZ_24883 [Jatropha curcas]
4 Hb_000252_190 0.1143245966 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
5 Hb_002820_090 0.1169815236 - - PREDICTED: WAT1-related protein At1g21890-like [Jatropha curcas]
6 Hb_004242_160 0.1233173083 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
7 Hb_000060_100 0.128503089 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
8 Hb_002236_020 0.1285153515 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
9 Hb_008550_030 0.1314865733 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
10 Hb_000087_180 0.1322808418 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011101_010 0.133067539 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
12 Hb_001511_270 0.1350012386 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
13 Hb_013691_060 0.1371522119 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
14 Hb_001098_020 0.1388085894 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
15 Hb_113396_010 0.1408142472 - - cytochrome P450, putative [Ricinus communis]
16 Hb_161045_010 0.1418725106 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
17 Hb_029238_020 0.1419018652 - - PREDICTED: expansin-like A1 [Jatropha curcas]
18 Hb_000008_170 0.142530566 - - PREDICTED: uncharacterized protein LOC105628076 [Jatropha curcas]
19 Hb_000417_230 0.1435330017 - - conserved hypothetical protein [Ricinus communis]
20 Hb_073973_180 0.1441953596 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_005714_140 Hb_005714_140 Hb_000260_130 Hb_000260_130 Hb_005714_140--Hb_000260_130 Hb_002267_030 Hb_002267_030 Hb_005714_140--Hb_002267_030 Hb_000252_190 Hb_000252_190 Hb_005714_140--Hb_000252_190 Hb_002820_090 Hb_002820_090 Hb_005714_140--Hb_002820_090 Hb_004242_160 Hb_004242_160 Hb_005714_140--Hb_004242_160 Hb_000060_100 Hb_000060_100 Hb_005714_140--Hb_000060_100 Hb_161045_010 Hb_161045_010 Hb_000260_130--Hb_161045_010 Hb_000260_130--Hb_002267_030 Hb_000260_130--Hb_004242_160 Hb_007305_040 Hb_007305_040 Hb_000260_130--Hb_007305_040 Hb_001511_270 Hb_001511_270 Hb_000260_130--Hb_001511_270 Hb_123078_010 Hb_123078_010 Hb_002267_030--Hb_123078_010 Hb_008550_030 Hb_008550_030 Hb_002267_030--Hb_008550_030 Hb_105814_020 Hb_105814_020 Hb_002267_030--Hb_105814_020 Hb_002267_030--Hb_002820_090 Hb_002236_020 Hb_002236_020 Hb_000252_190--Hb_002236_020 Hb_024857_010 Hb_024857_010 Hb_000252_190--Hb_024857_010 Hb_087468_010 Hb_087468_010 Hb_000252_190--Hb_087468_010 Hb_003800_010 Hb_003800_010 Hb_000252_190--Hb_003800_010 Hb_000656_370 Hb_000656_370 Hb_000252_190--Hb_000656_370 Hb_002820_090--Hb_000260_130 Hb_009787_020 Hb_009787_020 Hb_002820_090--Hb_009787_020 Hb_002422_030 Hb_002422_030 Hb_002820_090--Hb_002422_030 Hb_000087_180 Hb_000087_180 Hb_002820_090--Hb_000087_180 Hb_010417_120 Hb_010417_120 Hb_004242_160--Hb_010417_120 Hb_001477_080 Hb_001477_080 Hb_004242_160--Hb_001477_080 Hb_004242_160--Hb_001511_270 Hb_001098_020 Hb_001098_020 Hb_004242_160--Hb_001098_020 Hb_000529_050 Hb_000529_050 Hb_004242_160--Hb_000529_050 Hb_000313_190 Hb_000313_190 Hb_004242_160--Hb_000313_190 Hb_160576_010 Hb_160576_010 Hb_000060_100--Hb_160576_010 Hb_004945_050 Hb_004945_050 Hb_000060_100--Hb_004945_050 Hb_001104_270 Hb_001104_270 Hb_000060_100--Hb_001104_270 Hb_002218_080 Hb_002218_080 Hb_000060_100--Hb_002218_080 Hb_002110_050 Hb_002110_050 Hb_000060_100--Hb_002110_050 Hb_001956_160 Hb_001956_160 Hb_000060_100--Hb_001956_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.72334 0.538919 2.08342 0 0.0346331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.127868 0.583217

CAGE analysis