Hb_005725_030

Information

Type -
Description -
Location Contig5725: 4624-8704
Sequence    

Annotation

kegg
ID bvg:104895459
description U-box domain-containing protein 27-like
nr
ID XP_010680279.1
description PREDICTED: U-box domain-containing protein 27-like [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID V7CRC1
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G270300g PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49396: 3225-5190 , PASA_asmbl_49397: 6803-6975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_030 0.0 - - PREDICTED: U-box domain-containing protein 27-like [Beta vulgaris subsp. vulgaris]
2 Hb_002929_060 0.1136105028 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001500_060 0.1165038007 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Jatropha curcas]
4 Hb_001252_230 0.1189258451 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
5 Hb_000061_030 0.1202599747 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
6 Hb_170416_010 0.1217315514 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
7 Hb_001761_120 0.1220740131 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
8 Hb_006275_020 0.1226375979 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
9 Hb_003531_080 0.1263173402 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
10 Hb_000107_480 0.1289239634 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
11 Hb_000640_160 0.1315006825 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
12 Hb_000169_080 0.1316016665 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
13 Hb_001409_060 0.1320434553 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
14 Hb_002329_020 0.1322494332 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
15 Hb_023226_070 0.1323956651 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007290_030 0.1335029453 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
17 Hb_001226_150 0.1335508566 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
18 Hb_001951_200 0.1337555604 - - PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like [Jatropha curcas]
19 Hb_007007_120 0.1339117805 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
20 Hb_000227_270 0.133926779 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005725_030 Hb_005725_030 Hb_002929_060 Hb_002929_060 Hb_005725_030--Hb_002929_060 Hb_001500_060 Hb_001500_060 Hb_005725_030--Hb_001500_060 Hb_001252_230 Hb_001252_230 Hb_005725_030--Hb_001252_230 Hb_000061_030 Hb_000061_030 Hb_005725_030--Hb_000061_030 Hb_170416_010 Hb_170416_010 Hb_005725_030--Hb_170416_010 Hb_001761_120 Hb_001761_120 Hb_005725_030--Hb_001761_120 Hb_012384_030 Hb_012384_030 Hb_002929_060--Hb_012384_030 Hb_000402_120 Hb_000402_120 Hb_002929_060--Hb_000402_120 Hb_001776_060 Hb_001776_060 Hb_002929_060--Hb_001776_060 Hb_002929_060--Hb_170416_010 Hb_001025_120 Hb_001025_120 Hb_002929_060--Hb_001025_120 Hb_002716_060 Hb_002716_060 Hb_002929_060--Hb_002716_060 Hb_006275_020 Hb_006275_020 Hb_001500_060--Hb_006275_020 Hb_003531_080 Hb_003531_080 Hb_001500_060--Hb_003531_080 Hb_000340_420 Hb_000340_420 Hb_001500_060--Hb_000340_420 Hb_000120_130 Hb_000120_130 Hb_001500_060--Hb_000120_130 Hb_001500_060--Hb_001761_120 Hb_000227_270 Hb_000227_270 Hb_001500_060--Hb_000227_270 Hb_060094_020 Hb_060094_020 Hb_001252_230--Hb_060094_020 Hb_000645_170 Hb_000645_170 Hb_001252_230--Hb_000645_170 Hb_000205_260 Hb_000205_260 Hb_001252_230--Hb_000205_260 Hb_007044_110 Hb_007044_110 Hb_001252_230--Hb_007044_110 Hb_005288_070 Hb_005288_070 Hb_001252_230--Hb_005288_070 Hb_000086_500 Hb_000086_500 Hb_001252_230--Hb_000086_500 Hb_002329_020 Hb_002329_020 Hb_000061_030--Hb_002329_020 Hb_002783_040 Hb_002783_040 Hb_000061_030--Hb_002783_040 Hb_002267_140 Hb_002267_140 Hb_000061_030--Hb_002267_140 Hb_002263_040 Hb_002263_040 Hb_000061_030--Hb_002263_040 Hb_000061_030--Hb_006275_020 Hb_002843_120 Hb_002843_120 Hb_000061_030--Hb_002843_120 Hb_170416_010--Hb_001761_120 Hb_001226_150 Hb_001226_150 Hb_170416_010--Hb_001226_150 Hb_007765_100 Hb_007765_100 Hb_170416_010--Hb_007765_100 Hb_007007_120 Hb_007007_120 Hb_170416_010--Hb_007007_120 Hb_170416_010--Hb_003531_080 Hb_010931_070 Hb_010931_070 Hb_170416_010--Hb_010931_070 Hb_001761_120--Hb_003531_080 Hb_007290_030 Hb_007290_030 Hb_001761_120--Hb_007290_030 Hb_004052_080 Hb_004052_080 Hb_001761_120--Hb_004052_080 Hb_000339_040 Hb_000339_040 Hb_001761_120--Hb_000339_040 Hb_000103_340 Hb_000103_340 Hb_001761_120--Hb_000103_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.743509 1.41295 1.85504 0.587372 0.931275 0.679256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.923309 0.54478 1.21622 0.373028 1.24572

CAGE analysis