Hb_005725_070

Information

Type -
Description -
Location Contig5725: 21505-25032
Sequence    

Annotation

kegg
ID rcu:RCOM_1586680
description hypothetical protein
nr
ID XP_002510066.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R6X3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1586680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49401: 21684-24513 , PASA_asmbl_49402: 24574-25015
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012977_010 0.0720712667 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
3 Hb_001498_030 0.0728326501 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
4 Hb_002025_140 0.0852132838 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
5 Hb_002818_040 0.0870773762 - - tRNA synthetase-related family protein [Populus trichocarpa]
6 Hb_005314_010 0.0898700867 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_024399_010 0.0899020247 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
8 Hb_001969_040 0.090957935 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
9 Hb_007786_010 0.0936036019 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
10 Hb_000363_340 0.094382623 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
11 Hb_000165_130 0.0967348362 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
12 Hb_001408_090 0.0969112735 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
13 Hb_001226_180 0.0972821278 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
14 Hb_000025_750 0.0981688206 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
15 Hb_003125_060 0.0993767927 - - PREDICTED: snurportin-1 [Jatropha curcas]
16 Hb_007305_010 0.0996520366 - - PREDICTED: girdin-like [Jatropha curcas]
17 Hb_011930_010 0.1012399562 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
18 Hb_018663_020 0.1015387084 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
19 Hb_000692_170 0.1015485924 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
20 Hb_005147_110 0.1022022787 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_005725_070 Hb_005725_070 Hb_012977_010 Hb_012977_010 Hb_005725_070--Hb_012977_010 Hb_001498_030 Hb_001498_030 Hb_005725_070--Hb_001498_030 Hb_002025_140 Hb_002025_140 Hb_005725_070--Hb_002025_140 Hb_002818_040 Hb_002818_040 Hb_005725_070--Hb_002818_040 Hb_005314_010 Hb_005314_010 Hb_005725_070--Hb_005314_010 Hb_024399_010 Hb_024399_010 Hb_005725_070--Hb_024399_010 Hb_000347_080 Hb_000347_080 Hb_012977_010--Hb_000347_080 Hb_001969_040 Hb_001969_040 Hb_012977_010--Hb_001969_040 Hb_007786_010 Hb_007786_010 Hb_012977_010--Hb_007786_010 Hb_000363_340 Hb_000363_340 Hb_012977_010--Hb_000363_340 Hb_000165_130 Hb_000165_130 Hb_012977_010--Hb_000165_130 Hb_002133_030 Hb_002133_030 Hb_001498_030--Hb_002133_030 Hb_005144_040 Hb_005144_040 Hb_001498_030--Hb_005144_040 Hb_001498_030--Hb_001969_040 Hb_004724_360 Hb_004724_360 Hb_001498_030--Hb_004724_360 Hb_042083_070 Hb_042083_070 Hb_001498_030--Hb_042083_070 Hb_000573_040 Hb_000573_040 Hb_002025_140--Hb_000573_040 Hb_004531_090 Hb_004531_090 Hb_002025_140--Hb_004531_090 Hb_002025_140--Hb_000165_130 Hb_000173_370 Hb_000173_370 Hb_002025_140--Hb_000173_370 Hb_003216_110 Hb_003216_110 Hb_002025_140--Hb_003216_110 Hb_004032_350 Hb_004032_350 Hb_002025_140--Hb_004032_350 Hb_000340_510 Hb_000340_510 Hb_002818_040--Hb_000340_510 Hb_000462_150 Hb_000462_150 Hb_002818_040--Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_002818_040--Hb_003384_030 Hb_000001_180 Hb_000001_180 Hb_002818_040--Hb_000001_180 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230 Hb_005314_010--Hb_000001_180 Hb_000413_130 Hb_000413_130 Hb_005314_010--Hb_000413_130 Hb_005314_010--Hb_024399_010 Hb_005314_010--Hb_005914_230 Hb_029281_010 Hb_029281_010 Hb_005314_010--Hb_029281_010 Hb_000481_010 Hb_000481_010 Hb_024399_010--Hb_000481_010 Hb_011930_010 Hb_011930_010 Hb_024399_010--Hb_011930_010 Hb_024399_010--Hb_002818_040 Hb_024399_010--Hb_000340_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
166.838 44.5313 20.1036 22.7456 141.849 101.412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.2047 36.0637 51.9534 22.0699 9.69728

CAGE analysis