Hb_005725_110

Information

Type -
Description -
Location Contig5725: 36247-38084
Sequence    

Annotation

kegg
ID rcu:RCOM_1586620
description hypothetical protein
nr
ID XP_002510060.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R6W7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1586620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007477_040 0.1567441249 - - glutathione s-transferase, putative [Ricinus communis]
3 Hb_000504_010 0.2009532645 - - oleosin 18.2 kDa-like [Jatropha curcas]
4 Hb_008954_010 0.2176840323 - - -
5 Hb_002903_010 0.2193778254 - - 60S ribosomal protein L37-3 [Morus notabilis]
6 Hb_000804_030 0.2316096073 - - Protein C14orf111, putative [Ricinus communis]
7 Hb_000853_130 0.2356140935 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
8 Hb_185736_010 0.2618442583 - - -
9 Hb_007273_010 0.2622718779 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
10 Hb_001348_110 0.2627533571 - - PREDICTED: esterase-like [Jatropha curcas]
11 Hb_187134_010 0.2628514556 - - -
12 Hb_000012_070 0.2641062757 - - cytochrome P450, putative [Ricinus communis]
13 Hb_034661_020 0.2648033661 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
14 Hb_000111_020 0.2671310439 - - hypothetical protein SORBIDRAFT_04g003755 [Sorghum bicolor]
15 Hb_001627_030 0.2725346453 - - hypothetical protein JCGZ_11752 [Jatropha curcas]
16 Hb_000258_180 0.274467585 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
17 Hb_096292_010 0.2745017697 - - hypothetical protein JCGZ_25718 [Jatropha curcas]
18 Hb_115720_010 0.2782994615 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
19 Hb_000002_200 0.2788995025 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096 [Brassica rapa]
20 Hb_011016_040 0.2862334916 - - calcium-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005725_110 Hb_005725_110 Hb_007477_040 Hb_007477_040 Hb_005725_110--Hb_007477_040 Hb_000504_010 Hb_000504_010 Hb_005725_110--Hb_000504_010 Hb_008954_010 Hb_008954_010 Hb_005725_110--Hb_008954_010 Hb_002903_010 Hb_002903_010 Hb_005725_110--Hb_002903_010 Hb_000804_030 Hb_000804_030 Hb_005725_110--Hb_000804_030 Hb_000853_130 Hb_000853_130 Hb_005725_110--Hb_000853_130 Hb_187134_010 Hb_187134_010 Hb_007477_040--Hb_187134_010 Hb_007273_010 Hb_007273_010 Hb_007477_040--Hb_007273_010 Hb_185736_010 Hb_185736_010 Hb_007477_040--Hb_185736_010 Hb_011016_040 Hb_011016_040 Hb_007477_040--Hb_011016_040 Hb_000143_040 Hb_000143_040 Hb_007477_040--Hb_000143_040 Hb_115720_010 Hb_115720_010 Hb_000504_010--Hb_115720_010 Hb_000504_010--Hb_002903_010 Hb_001998_060 Hb_001998_060 Hb_000504_010--Hb_001998_060 Hb_002788_040 Hb_002788_040 Hb_000504_010--Hb_002788_040 Hb_039112_010 Hb_039112_010 Hb_000504_010--Hb_039112_010 Hb_001348_110 Hb_001348_110 Hb_008954_010--Hb_001348_110 Hb_008954_010--Hb_000804_030 Hb_001520_020 Hb_001520_020 Hb_008954_010--Hb_001520_020 Hb_000011_340 Hb_000011_340 Hb_008954_010--Hb_000011_340 Hb_001140_240 Hb_001140_240 Hb_008954_010--Hb_001140_240 Hb_002903_010--Hb_001998_060 Hb_002903_010--Hb_115720_010 Hb_002903_010--Hb_039112_010 Hb_002903_010--Hb_000804_030 Hb_000869_110 Hb_000869_110 Hb_002903_010--Hb_000869_110 Hb_000804_030--Hb_001348_110 Hb_031284_050 Hb_031284_050 Hb_000804_030--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_000804_030--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_000804_030--Hb_018609_040 Hb_000853_130--Hb_002903_010 Hb_000853_130--Hb_000504_010 Hb_001085_180 Hb_001085_180 Hb_000853_130--Hb_001085_180 Hb_005408_040 Hb_005408_040 Hb_000853_130--Hb_005408_040 Hb_000012_070 Hb_000012_070 Hb_000853_130--Hb_000012_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.588564 3.26526 0 0.655998 0

CAGE analysis