Hb_005725_160

Information

Type -
Description -
Location Contig5725: 74538-75940
Sequence    

Annotation

kegg
ID rcu:RCOM_1586480
description hypothetical protein
nr
ID XP_012068174.1
description PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15994 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49413: 74288-76175 , PASA_asmbl_49414: 74702-75975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_160 0.0 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
2 Hb_001950_100 0.1030644857 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
3 Hb_001232_040 0.113848835 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
4 Hb_009222_080 0.1162389207 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
5 Hb_003097_220 0.1185627855 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
6 Hb_000622_030 0.1270539993 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
7 Hb_002168_070 0.129436782 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
8 Hb_143871_010 0.1344095378 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
9 Hb_006355_060 0.1378700545 - - PREDICTED: transcription factor PIF1-like isoform X2 [Jatropha curcas]
10 Hb_005790_010 0.1401484561 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
11 Hb_006916_140 0.1425485135 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
12 Hb_001158_250 0.1441221233 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001305_020 0.1444127476 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
14 Hb_007103_020 0.1468408928 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
15 Hb_000000_290 0.1470779575 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
16 Hb_031862_120 0.1490680394 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
17 Hb_012239_060 0.1503389446 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
18 Hb_005051_010 0.1517434758 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
19 Hb_000023_180 0.1522477396 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
20 Hb_000270_750 0.152576045 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]

Gene co-expression network

sample Hb_005725_160 Hb_005725_160 Hb_001950_100 Hb_001950_100 Hb_005725_160--Hb_001950_100 Hb_001232_040 Hb_001232_040 Hb_005725_160--Hb_001232_040 Hb_009222_080 Hb_009222_080 Hb_005725_160--Hb_009222_080 Hb_003097_220 Hb_003097_220 Hb_005725_160--Hb_003097_220 Hb_000622_030 Hb_000622_030 Hb_005725_160--Hb_000622_030 Hb_002168_070 Hb_002168_070 Hb_005725_160--Hb_002168_070 Hb_001950_100--Hb_000622_030 Hb_000023_180 Hb_000023_180 Hb_001950_100--Hb_000023_180 Hb_001950_100--Hb_001232_040 Hb_000000_290 Hb_000000_290 Hb_001950_100--Hb_000000_290 Hb_001950_100--Hb_002168_070 Hb_001158_250 Hb_001158_250 Hb_001232_040--Hb_001158_250 Hb_001232_040--Hb_000622_030 Hb_000271_130 Hb_000271_130 Hb_001232_040--Hb_000271_130 Hb_001232_040--Hb_000000_290 Hb_005723_090 Hb_005723_090 Hb_001232_040--Hb_005723_090 Hb_002685_220 Hb_002685_220 Hb_009222_080--Hb_002685_220 Hb_006916_140 Hb_006916_140 Hb_009222_080--Hb_006916_140 Hb_010968_030 Hb_010968_030 Hb_009222_080--Hb_010968_030 Hb_005329_030 Hb_005329_030 Hb_009222_080--Hb_005329_030 Hb_000245_100 Hb_000245_100 Hb_009222_080--Hb_000245_100 Hb_006355_060 Hb_006355_060 Hb_003097_220--Hb_006355_060 Hb_002613_040 Hb_002613_040 Hb_003097_220--Hb_002613_040 Hb_114917_010 Hb_114917_010 Hb_003097_220--Hb_114917_010 Hb_012239_060 Hb_012239_060 Hb_003097_220--Hb_012239_060 Hb_005057_030 Hb_005057_030 Hb_003097_220--Hb_005057_030 Hb_000622_030--Hb_001158_250 Hb_001305_020 Hb_001305_020 Hb_000622_030--Hb_001305_020 Hb_000622_030--Hb_005723_090 Hb_000622_030--Hb_000000_290 Hb_005183_100 Hb_005183_100 Hb_000622_030--Hb_005183_100 Hb_009771_040 Hb_009771_040 Hb_002168_070--Hb_009771_040 Hb_002043_070 Hb_002043_070 Hb_002168_070--Hb_002043_070 Hb_000434_060 Hb_000434_060 Hb_002168_070--Hb_000434_060 Hb_002053_190 Hb_002053_190 Hb_002168_070--Hb_002053_190 Hb_001405_170 Hb_001405_170 Hb_002168_070--Hb_001405_170 Hb_005211_210 Hb_005211_210 Hb_002168_070--Hb_005211_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.301391 4.51113 1.84173 8.88438 0.268132 0.107664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.119918 0.0314434 0.0585301 1.02003 8.72588

CAGE analysis