Hb_005725_170

Information

Type -
Description -
Location Contig5725: 76261-95504
Sequence    

Annotation

kegg
ID rcu:RCOM_1586470
description protein binding protein, putative
nr
ID XP_012068171.1
description PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
swissprot
ID B6EUA9
description Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1
trembl
ID A0A067KZF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15993 PE=4 SV=1
Gene Ontology
ID GO:0044424
description pre-mrna-processing protein 40a isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49415: 76364-95283 , PASA_asmbl_49416: 86691-87037
cDNA
(Sanger)
(ID:Location)		 021_A24.ab1: 91605-95283 , 040_C06.ab1: 91357-95283 , 049_D09.ab1: 92607-95283

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_170 0.0 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
2 Hb_005260_040 0.0756831329 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
3 Hb_002784_010 0.0848479377 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
4 Hb_003739_030 0.0890022021 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
5 Hb_001493_040 0.0925172844 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
6 Hb_001452_220 0.0926313412 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
7 Hb_028487_010 0.0937293959 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
8 Hb_000307_210 0.0937928582 - - Transportin 1 isoform 1 [Theobroma cacao]
9 Hb_001034_070 0.0975434536 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_003177_060 0.0983028393 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
11 Hb_006573_170 0.098940796 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012184_060 0.1001416324 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
13 Hb_002909_090 0.1006470782 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
14 Hb_000010_360 0.1014966667 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
15 Hb_007426_130 0.1034045084 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
16 Hb_086287_010 0.1038830188 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
17 Hb_003498_120 0.1042232224 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
18 Hb_002422_050 0.1044706816 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
19 Hb_000261_030 0.1061366252 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
20 Hb_000786_040 0.1067432017 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]

Gene co-expression network

sample Hb_005725_170 Hb_005725_170 Hb_005260_040 Hb_005260_040 Hb_005725_170--Hb_005260_040 Hb_002784_010 Hb_002784_010 Hb_005725_170--Hb_002784_010 Hb_003739_030 Hb_003739_030 Hb_005725_170--Hb_003739_030 Hb_001493_040 Hb_001493_040 Hb_005725_170--Hb_001493_040 Hb_001452_220 Hb_001452_220 Hb_005725_170--Hb_001452_220 Hb_028487_010 Hb_028487_010 Hb_005725_170--Hb_028487_010 Hb_000158_130 Hb_000158_130 Hb_005260_040--Hb_000158_130 Hb_011671_230 Hb_011671_230 Hb_005260_040--Hb_011671_230 Hb_003529_130 Hb_003529_130 Hb_005260_040--Hb_003529_130 Hb_003388_100 Hb_003388_100 Hb_005260_040--Hb_003388_100 Hb_000120_620 Hb_000120_620 Hb_005260_040--Hb_000120_620 Hb_005214_150 Hb_005214_150 Hb_002784_010--Hb_005214_150 Hb_000025_710 Hb_000025_710 Hb_002784_010--Hb_000025_710 Hb_000786_040 Hb_000786_040 Hb_002784_010--Hb_000786_040 Hb_000010_360 Hb_000010_360 Hb_002784_010--Hb_000010_360 Hb_001191_120 Hb_001191_120 Hb_002784_010--Hb_001191_120 Hb_000261_030 Hb_000261_030 Hb_002784_010--Hb_000261_030 Hb_003739_030--Hb_000261_030 Hb_003739_030--Hb_000010_360 Hb_009771_110 Hb_009771_110 Hb_003739_030--Hb_009771_110 Hb_003739_030--Hb_001452_220 Hb_003739_030--Hb_002784_010 Hb_148909_030 Hb_148909_030 Hb_003739_030--Hb_148909_030 Hb_001417_050 Hb_001417_050 Hb_001493_040--Hb_001417_050 Hb_000935_090 Hb_000935_090 Hb_001493_040--Hb_000935_090 Hb_034243_020 Hb_034243_020 Hb_001493_040--Hb_034243_020 Hb_010315_090 Hb_010315_090 Hb_001493_040--Hb_010315_090 Hb_000160_290 Hb_000160_290 Hb_001493_040--Hb_000160_290 Hb_002422_050 Hb_002422_050 Hb_001493_040--Hb_002422_050 Hb_002391_370 Hb_002391_370 Hb_001452_220--Hb_002391_370 Hb_003913_110 Hb_003913_110 Hb_001452_220--Hb_003913_110 Hb_001452_220--Hb_028487_010 Hb_002909_090 Hb_002909_090 Hb_001452_220--Hb_002909_090 Hb_011173_030 Hb_011173_030 Hb_001452_220--Hb_011173_030 Hb_000307_210 Hb_000307_210 Hb_028487_010--Hb_000307_210 Hb_028487_010--Hb_011173_030 Hb_001821_090 Hb_001821_090 Hb_028487_010--Hb_001821_090 Hb_002107_070 Hb_002107_070 Hb_028487_010--Hb_002107_070 Hb_000740_100 Hb_000740_100 Hb_028487_010--Hb_000740_100 Hb_005143_030 Hb_005143_030 Hb_028487_010--Hb_005143_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.3275 32.6906 18.8097 14.5854 24.2287 47.0219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4183 10.0869 9.72183 36.7051 23.0097

CAGE analysis