Hb_005725_180

Information

Type -
Description -
Location Contig5725: 82317-82926
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_180 0.0 - - -
2 Hb_005843_070 0.0239535241 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
3 Hb_001514_110 0.0396822071 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012691_040 0.0544224834 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
5 Hb_004117_360 0.0615382744 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
6 Hb_015978_040 0.0644475403 - - PREDICTED: uncharacterized protein LOC105642609 [Jatropha curcas]
7 Hb_111908_010 0.0658201147 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_005946_190 0.066423441 - - hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]
9 Hb_142691_010 0.0740855373 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
10 Hb_001565_050 0.079887376 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
11 Hb_073423_010 0.0811097454 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_008579_010 0.0825330459 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
13 Hb_002486_030 0.0843585909 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
14 Hb_004157_080 0.0875983928 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
15 Hb_022768_010 0.0920578765 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
16 Hb_034132_010 0.0928975936 - - hypothetical protein B456_007G015400 [Gossypium raimondii]
17 Hb_110048_010 0.1017720159 - - PREDICTED: uncharacterized protein LOC104887199 [Beta vulgaris subsp. vulgaris]
18 Hb_032966_010 0.1084303311 - - receptor serine/threonine kinase, putative [Ricinus communis]
19 Hb_147137_020 0.1108756038 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
20 Hb_005843_080 0.1117964687 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005725_180 Hb_005725_180 Hb_005843_070 Hb_005843_070 Hb_005725_180--Hb_005843_070 Hb_001514_110 Hb_001514_110 Hb_005725_180--Hb_001514_110 Hb_012691_040 Hb_012691_040 Hb_005725_180--Hb_012691_040 Hb_004117_360 Hb_004117_360 Hb_005725_180--Hb_004117_360 Hb_015978_040 Hb_015978_040 Hb_005725_180--Hb_015978_040 Hb_111908_010 Hb_111908_010 Hb_005725_180--Hb_111908_010 Hb_005843_070--Hb_001514_110 Hb_005946_190 Hb_005946_190 Hb_005843_070--Hb_005946_190 Hb_005843_070--Hb_015978_040 Hb_005843_070--Hb_111908_010 Hb_005843_070--Hb_012691_040 Hb_001514_110--Hb_012691_040 Hb_001514_110--Hb_004117_360 Hb_073423_010 Hb_073423_010 Hb_001514_110--Hb_073423_010 Hb_142691_010 Hb_142691_010 Hb_001514_110--Hb_142691_010 Hb_002486_030 Hb_002486_030 Hb_001514_110--Hb_002486_030 Hb_012691_040--Hb_142691_010 Hb_008579_010 Hb_008579_010 Hb_012691_040--Hb_008579_010 Hb_012691_040--Hb_073423_010 Hb_012691_040--Hb_002486_030 Hb_012691_040--Hb_004117_360 Hb_004117_360--Hb_073423_010 Hb_004117_360--Hb_002486_030 Hb_004117_360--Hb_008579_010 Hb_004117_360--Hb_142691_010 Hb_034132_010 Hb_034132_010 Hb_015978_040--Hb_034132_010 Hb_022768_010 Hb_022768_010 Hb_015978_040--Hb_022768_010 Hb_032966_010 Hb_032966_010 Hb_015978_040--Hb_032966_010 Hb_001565_050 Hb_001565_050 Hb_015978_040--Hb_001565_050 Hb_111908_010--Hb_004117_360 Hb_111908_010--Hb_001514_110 Hb_110048_010 Hb_110048_010 Hb_111908_010--Hb_110048_010 Hb_111908_010--Hb_012691_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.68844 0.24513 0.0657035 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis