Hb_005725_250

Information

Type -
Description -
Location Contig5725: 158461-162832
Sequence    

Annotation

kegg
ID rcu:RCOM_1585980
description heat shock protein binding protein, putative
nr
ID XP_012068162.1
description PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
swissprot
ID Q97BG9
description Chaperone protein DnaJ OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=dnaJ PE=3 SV=1
trembl
ID A0A067KZG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15984 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49428: 158620-162678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_250 0.0 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
2 Hb_001828_060 0.0604725456 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
3 Hb_002534_150 0.0626819414 - - catalytic, putative [Ricinus communis]
4 Hb_000676_180 0.0666929498 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
5 Hb_002739_100 0.06792427 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
6 Hb_012019_010 0.0699264531 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
7 Hb_005779_060 0.0709518021 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
8 Hb_027380_050 0.0721761788 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
9 Hb_003428_030 0.0730255567 - - tRNA, putative [Ricinus communis]
10 Hb_012286_030 0.0730340348 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
11 Hb_007691_030 0.0733782871 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
12 Hb_001163_050 0.0737306828 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
13 Hb_000373_070 0.0762475085 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
14 Hb_000025_640 0.076837116 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
15 Hb_005846_040 0.0769465737 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
16 Hb_000563_320 0.0771559877 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
17 Hb_000680_160 0.0773843801 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
18 Hb_075449_010 0.0794480208 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
19 Hb_000059_370 0.0798435809 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
20 Hb_003125_120 0.0798887838 - - PREDICTED: TITAN-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_005725_250 Hb_005725_250 Hb_001828_060 Hb_001828_060 Hb_005725_250--Hb_001828_060 Hb_002534_150 Hb_002534_150 Hb_005725_250--Hb_002534_150 Hb_000676_180 Hb_000676_180 Hb_005725_250--Hb_000676_180 Hb_002739_100 Hb_002739_100 Hb_005725_250--Hb_002739_100 Hb_012019_010 Hb_012019_010 Hb_005725_250--Hb_012019_010 Hb_005779_060 Hb_005779_060 Hb_005725_250--Hb_005779_060 Hb_001828_060--Hb_002534_150 Hb_000059_370 Hb_000059_370 Hb_001828_060--Hb_000059_370 Hb_027380_050 Hb_027380_050 Hb_001828_060--Hb_027380_050 Hb_003780_030 Hb_003780_030 Hb_001828_060--Hb_003780_030 Hb_012490_070 Hb_012490_070 Hb_001828_060--Hb_012490_070 Hb_001534_120 Hb_001534_120 Hb_002534_150--Hb_001534_120 Hb_002534_150--Hb_000059_370 Hb_005697_060 Hb_005697_060 Hb_002534_150--Hb_005697_060 Hb_004116_190 Hb_004116_190 Hb_002534_150--Hb_004116_190 Hb_000676_180--Hb_004116_190 Hb_000479_090 Hb_000479_090 Hb_000676_180--Hb_000479_090 Hb_012286_030 Hb_012286_030 Hb_000676_180--Hb_012286_030 Hb_005846_040 Hb_005846_040 Hb_000676_180--Hb_005846_040 Hb_004635_100 Hb_004635_100 Hb_000676_180--Hb_004635_100 Hb_000876_070 Hb_000876_070 Hb_002739_100--Hb_000876_070 Hb_002739_100--Hb_005779_060 Hb_007691_030 Hb_007691_030 Hb_002739_100--Hb_007691_030 Hb_001242_060 Hb_001242_060 Hb_002739_100--Hb_001242_060 Hb_000928_210 Hb_000928_210 Hb_002739_100--Hb_000928_210 Hb_031527_040 Hb_031527_040 Hb_002739_100--Hb_031527_040 Hb_002046_180 Hb_002046_180 Hb_012019_010--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_012019_010--Hb_005463_100 Hb_012019_010--Hb_005779_060 Hb_012019_010--Hb_000876_070 Hb_002110_150 Hb_002110_150 Hb_012019_010--Hb_002110_150 Hb_000614_160 Hb_000614_160 Hb_012019_010--Hb_000614_160 Hb_005779_060--Hb_000876_070 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_005779_060--Hb_002046_180 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_005779_060--Hb_002110_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.0581 23.8101 19.087 22.2059 32.7684 23.1451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.0519 51.8428 29.1133 19.6708 23.4037

CAGE analysis