Hb_005725_270

Information

Type -
Description -
Location Contig5725: 174444-177724
Sequence    

Annotation

kegg
ID pmum:103320504
description uncharacterized LOC103320504
nr
ID XP_012068157.1
description PREDICTED: uncharacterized protein LOC105630802 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M5XSQ2
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011235mg PE=4 SV=1
Gene Ontology
ID GO:0003677
description PREDICTED: uncharacterized protein LOC105630802 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49432: 174406-177582
cDNA
(Sanger)
(ID:Location)		 005_G08.ab1: 174408-177539 , 032_L21.ab1: 174408-177441

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_270 0.0 - - PREDICTED: uncharacterized protein LOC105630802 isoform X1 [Jatropha curcas]
2 Hb_002197_050 0.0813392483 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
3 Hb_003780_030 0.0847978343 - - PREDICTED: protein CMSS1 [Jatropha curcas]
4 Hb_005054_350 0.0867572828 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
5 Hb_108350_010 0.0885690548 - - GTP-binding protein erg, putative [Ricinus communis]
6 Hb_172632_100 0.0893337457 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]
7 Hb_003813_050 0.0909593978 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
8 Hb_001102_240 0.0911033176 - - PREDICTED: NADH kinase isoform X1 [Jatropha curcas]
9 Hb_001279_150 0.0931105911 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
10 Hb_000317_240 0.0941764697 - - PREDICTED: protein DYAD [Jatropha curcas]
11 Hb_000137_090 0.0941842644 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]
12 Hb_008554_060 0.0943320424 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
13 Hb_000768_090 0.0947217552 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
14 Hb_007676_080 0.0952276455 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
15 Hb_000468_060 0.0954544452 - - ku P70 DNA helicase, putative [Ricinus communis]
16 Hb_000227_080 0.0966330499 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000139_290 0.099047818 - - PREDICTED: peroxisomal adenine nucleotide carrier 1-like isoform X1 [Jatropha curcas]
18 Hb_001133_120 0.0992072938 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
19 Hb_004837_240 0.1010170343 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
20 Hb_007017_090 0.1018678035 - - PREDICTED: coiled-coil domain-containing protein 186 [Jatropha curcas]

Gene co-expression network

sample Hb_005725_270 Hb_005725_270 Hb_002197_050 Hb_002197_050 Hb_005725_270--Hb_002197_050 Hb_003780_030 Hb_003780_030 Hb_005725_270--Hb_003780_030 Hb_005054_350 Hb_005054_350 Hb_005725_270--Hb_005054_350 Hb_108350_010 Hb_108350_010 Hb_005725_270--Hb_108350_010 Hb_172632_100 Hb_172632_100 Hb_005725_270--Hb_172632_100 Hb_003813_050 Hb_003813_050 Hb_005725_270--Hb_003813_050 Hb_000137_090 Hb_000137_090 Hb_002197_050--Hb_000137_090 Hb_000948_160 Hb_000948_160 Hb_002197_050--Hb_000948_160 Hb_000431_170 Hb_000431_170 Hb_002197_050--Hb_000431_170 Hb_000003_320 Hb_000003_320 Hb_002197_050--Hb_000003_320 Hb_000312_080 Hb_000312_080 Hb_002197_050--Hb_000312_080 Hb_031340_050 Hb_031340_050 Hb_002197_050--Hb_031340_050 Hb_007576_080 Hb_007576_080 Hb_003780_030--Hb_007576_080 Hb_038172_010 Hb_038172_010 Hb_003780_030--Hb_038172_010 Hb_003525_010 Hb_003525_010 Hb_003780_030--Hb_003525_010 Hb_000317_240 Hb_000317_240 Hb_003780_030--Hb_000317_240 Hb_001481_090 Hb_001481_090 Hb_003780_030--Hb_001481_090 Hb_014109_040 Hb_014109_040 Hb_003780_030--Hb_014109_040 Hb_000120_470 Hb_000120_470 Hb_005054_350--Hb_000120_470 Hb_000768_090 Hb_000768_090 Hb_005054_350--Hb_000768_090 Hb_003435_020 Hb_003435_020 Hb_005054_350--Hb_003435_020 Hb_001758_100 Hb_001758_100 Hb_005054_350--Hb_001758_100 Hb_000032_380 Hb_000032_380 Hb_005054_350--Hb_000032_380 Hb_002078_140 Hb_002078_140 Hb_005054_350--Hb_002078_140 Hb_000976_170 Hb_000976_170 Hb_108350_010--Hb_000976_170 Hb_000085_050 Hb_000085_050 Hb_108350_010--Hb_000085_050 Hb_000120_460 Hb_000120_460 Hb_108350_010--Hb_000120_460 Hb_002183_090 Hb_002183_090 Hb_108350_010--Hb_002183_090 Hb_058999_020 Hb_058999_020 Hb_108350_010--Hb_058999_020 Hb_000092_170 Hb_000092_170 Hb_108350_010--Hb_000092_170 Hb_001318_280 Hb_001318_280 Hb_172632_100--Hb_001318_280 Hb_011628_060 Hb_011628_060 Hb_172632_100--Hb_011628_060 Hb_001268_240 Hb_001268_240 Hb_172632_100--Hb_001268_240 Hb_000081_160 Hb_000081_160 Hb_172632_100--Hb_000081_160 Hb_008616_050 Hb_008616_050 Hb_172632_100--Hb_008616_050 Hb_001599_040 Hb_001599_040 Hb_172632_100--Hb_001599_040 Hb_003813_050--Hb_000312_080 Hb_000181_050 Hb_000181_050 Hb_003813_050--Hb_000181_050 Hb_003813_050--Hb_002197_050 Hb_002889_030 Hb_002889_030 Hb_003813_050--Hb_002889_030 Hb_001348_020 Hb_001348_020 Hb_003813_050--Hb_001348_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.12913 4.89564 9.61565 8.56892 9.25001 12.9512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.8151 18.5014 9.12021 15.5648 5.27402

CAGE analysis