Hb_005730_020

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig5730: 31788-35631
Sequence    

Annotation

kegg
ID pop:POPTR_0003s02890g
description hypothetical protein
nr
ID XP_012069011.1
description PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
swissprot
ID Q94AR6
description Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana GN=DOF3.1 PE=2 SV=2
trembl
ID A0A067KXF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24801 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49453: 31946-33780 , PASA_asmbl_49454: 31946-33770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005730_020 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
2 Hb_002609_260 0.0604603607 - - CCCH-type zinc finger protein [Hevea brasiliensis]
3 Hb_000264_190 0.0724643095 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
4 Hb_009510_030 0.0772234376 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
5 Hb_003001_030 0.0806332963 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
6 Hb_010931_100 0.0807222277 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
7 Hb_000563_540 0.0845276622 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
8 Hb_017134_040 0.0874901729 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
9 Hb_004126_010 0.0889049983 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
10 Hb_005488_100 0.094682735 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
11 Hb_026048_090 0.0995370404 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007178_010 0.1003823327 - - pseudo-hevein [Hevea brasiliensis]
13 Hb_014067_010 0.1015203413 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
14 Hb_002890_220 0.1028648378 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
15 Hb_000249_110 0.1033178946 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
16 Hb_027751_020 0.1060493154 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
17 Hb_002232_180 0.106119765 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
18 Hb_002989_080 0.1090544629 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
19 Hb_000771_140 0.1107951037 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
20 Hb_002301_320 0.1139310642 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]

Gene co-expression network

sample Hb_005730_020 Hb_005730_020 Hb_002609_260 Hb_002609_260 Hb_005730_020--Hb_002609_260 Hb_000264_190 Hb_000264_190 Hb_005730_020--Hb_000264_190 Hb_009510_030 Hb_009510_030 Hb_005730_020--Hb_009510_030 Hb_003001_030 Hb_003001_030 Hb_005730_020--Hb_003001_030 Hb_010931_100 Hb_010931_100 Hb_005730_020--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_005730_020--Hb_000563_540 Hb_002609_260--Hb_000264_190 Hb_002609_260--Hb_010931_100 Hb_005488_100 Hb_005488_100 Hb_002609_260--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_002609_260--Hb_027751_020 Hb_002609_260--Hb_000563_540 Hb_000264_190--Hb_010931_100 Hb_000264_190--Hb_000563_540 Hb_000264_190--Hb_009510_030 Hb_002890_220 Hb_002890_220 Hb_000264_190--Hb_002890_220 Hb_004126_010 Hb_004126_010 Hb_009510_030--Hb_004126_010 Hb_002506_010 Hb_002506_010 Hb_009510_030--Hb_002506_010 Hb_026048_090 Hb_026048_090 Hb_009510_030--Hb_026048_090 Hb_000771_140 Hb_000771_140 Hb_009510_030--Hb_000771_140 Hb_000057_060 Hb_000057_060 Hb_009510_030--Hb_000057_060 Hb_009510_030--Hb_003001_030 Hb_114684_020 Hb_114684_020 Hb_003001_030--Hb_114684_020 Hb_003001_030--Hb_002609_260 Hb_003001_030--Hb_004126_010 Hb_000249_110 Hb_000249_110 Hb_003001_030--Hb_000249_110 Hb_004545_150 Hb_004545_150 Hb_010931_100--Hb_004545_150 Hb_010931_100--Hb_000563_540 Hb_010931_100--Hb_005488_100 Hb_010931_100--Hb_027751_020 Hb_000563_540--Hb_027751_020 Hb_000571_070 Hb_000571_070 Hb_000563_540--Hb_000571_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
295.406 15.5326 2.06259 7.00753 281.261 285.606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
215.723 178.703 221.451 16.0164 5.01751

CAGE analysis