Hb_005730_030

Information

Type -
Description -
Location Contig5730: 43998-46573
Sequence    

Annotation

kegg
ID rcu:RCOM_1674280
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_002509464.1
description eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
swissprot
ID P56820
description Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana GN=TIF3D1 PE=1 SV=1
trembl
ID B9RBD0
description Eukaryotic translation initiation factor 3 subunit D OS=Ricinus communis GN=RCOM_1674280 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49455: 44030-44927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005730_030 0.0 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
2 Hb_004055_040 0.055179014 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
3 Hb_140171_010 0.0671628652 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
4 Hb_000244_250 0.0673605709 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
5 Hb_002928_060 0.0682448462 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
6 Hb_022408_010 0.0711508818 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
7 Hb_004204_080 0.0720136822 - - diacylglycerol kinase, theta, putative [Ricinus communis]
8 Hb_002307_100 0.0731063339 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
9 Hb_002874_070 0.0756336886 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
10 Hb_033834_010 0.0764865653 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
11 Hb_003362_040 0.079194406 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
12 Hb_001504_160 0.0799990988 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
13 Hb_001541_020 0.0803716597 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
14 Hb_000627_080 0.0819503591 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
15 Hb_001366_040 0.0820007981 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
16 Hb_000390_070 0.0833110731 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
17 Hb_004440_100 0.0833204653 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
18 Hb_000005_380 0.0842391767 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
19 Hb_002039_010 0.0845161037 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
20 Hb_000230_080 0.08480017 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]

Gene co-expression network

sample Hb_005730_030 Hb_005730_030 Hb_004055_040 Hb_004055_040 Hb_005730_030--Hb_004055_040 Hb_140171_010 Hb_140171_010 Hb_005730_030--Hb_140171_010 Hb_000244_250 Hb_000244_250 Hb_005730_030--Hb_000244_250 Hb_002928_060 Hb_002928_060 Hb_005730_030--Hb_002928_060 Hb_022408_010 Hb_022408_010 Hb_005730_030--Hb_022408_010 Hb_004204_080 Hb_004204_080 Hb_005730_030--Hb_004204_080 Hb_004055_040--Hb_002928_060 Hb_001366_040 Hb_001366_040 Hb_004055_040--Hb_001366_040 Hb_001871_040 Hb_001871_040 Hb_004055_040--Hb_001871_040 Hb_004055_040--Hb_000244_250 Hb_000915_050 Hb_000915_050 Hb_004055_040--Hb_000915_050 Hb_002255_050 Hb_002255_050 Hb_140171_010--Hb_002255_050 Hb_007188_070 Hb_007188_070 Hb_140171_010--Hb_007188_070 Hb_140171_010--Hb_002928_060 Hb_033834_010 Hb_033834_010 Hb_140171_010--Hb_033834_010 Hb_140171_010--Hb_004204_080 Hb_000005_380 Hb_000005_380 Hb_000244_250--Hb_000005_380 Hb_000244_250--Hb_000915_050 Hb_007586_030 Hb_007586_030 Hb_000244_250--Hb_007586_030 Hb_000244_250--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_000244_250--Hb_001541_020 Hb_003362_040 Hb_003362_040 Hb_000244_250--Hb_003362_040 Hb_002874_070 Hb_002874_070 Hb_002928_060--Hb_002874_070 Hb_000230_330 Hb_000230_330 Hb_002928_060--Hb_000230_330 Hb_002928_060--Hb_001871_040 Hb_002928_060--Hb_003362_040 Hb_022408_010--Hb_001541_020 Hb_022408_010--Hb_002255_050 Hb_002221_050 Hb_002221_050 Hb_022408_010--Hb_002221_050 Hb_000424_010 Hb_000424_010 Hb_022408_010--Hb_000424_010 Hb_000107_500 Hb_000107_500 Hb_022408_010--Hb_000107_500 Hb_001797_050 Hb_001797_050 Hb_004204_080--Hb_001797_050 Hb_005532_050 Hb_005532_050 Hb_004204_080--Hb_005532_050 Hb_000031_050 Hb_000031_050 Hb_004204_080--Hb_000031_050 Hb_004204_080--Hb_022408_010 Hb_004204_080--Hb_001541_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.9127 46.3861 24.2881 25.1813 104.11 102.276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.3413 36.1187 89.3176 43.7718 19.7914

CAGE analysis