Hb_005730_070

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig5730: 91614-98537
Sequence    

Annotation

kegg
ID rcu:RCOM_0313190
description multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative (EC:1.3.1.74)
nr
ID XP_012069008.1
description PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
swissprot
ID Q8LGU1
description ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3
trembl
ID A0A067KXE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24796 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49459: 91566-97973 , PASA_asmbl_49460: 97247-97511 , PASA_asmbl_49461: 98056-98187
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005730_070 0.0 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
2 Hb_001349_020 0.0909846723 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
3 Hb_008554_090 0.098538151 - - zinc finger protein, putative [Ricinus communis]
4 Hb_000057_180 0.0989506384 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
5 Hb_000017_320 0.1078970152 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
6 Hb_002304_190 0.1142838234 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
7 Hb_002003_010 0.1146539486 - - hypothetical protein JCGZ_15062 [Jatropha curcas]
8 Hb_150730_010 0.1151835053 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
9 Hb_033312_050 0.1173313063 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
10 Hb_000723_050 0.1233461539 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
11 Hb_002110_060 0.1249132713 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
12 Hb_001454_290 0.126302362 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
13 Hb_001345_020 0.1285550087 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
14 Hb_022092_050 0.1315481877 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
15 Hb_000556_180 0.1324302309 - - hypothetical protein POPTR_0014s06690g [Populus trichocarpa]
16 Hb_000696_250 0.1362766815 - - PREDICTED: patellin-6 [Jatropha curcas]
17 Hb_009767_030 0.1385911346 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
18 Hb_005679_110 0.143043383 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
19 Hb_002003_030 0.1437314614 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
20 Hb_039022_020 0.1442760008 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]

Gene co-expression network

sample Hb_005730_070 Hb_005730_070 Hb_001349_020 Hb_001349_020 Hb_005730_070--Hb_001349_020 Hb_008554_090 Hb_008554_090 Hb_005730_070--Hb_008554_090 Hb_000057_180 Hb_000057_180 Hb_005730_070--Hb_000057_180 Hb_000017_320 Hb_000017_320 Hb_005730_070--Hb_000017_320 Hb_002304_190 Hb_002304_190 Hb_005730_070--Hb_002304_190 Hb_002003_010 Hb_002003_010 Hb_005730_070--Hb_002003_010 Hb_005679_110 Hb_005679_110 Hb_001349_020--Hb_005679_110 Hb_001345_020 Hb_001345_020 Hb_001349_020--Hb_001345_020 Hb_001349_020--Hb_000017_320 Hb_000696_250 Hb_000696_250 Hb_001349_020--Hb_000696_250 Hb_001349_020--Hb_002003_010 Hb_002110_060 Hb_002110_060 Hb_008554_090--Hb_002110_060 Hb_009070_030 Hb_009070_030 Hb_008554_090--Hb_009070_030 Hb_004525_110 Hb_004525_110 Hb_008554_090--Hb_004525_110 Hb_150730_010 Hb_150730_010 Hb_008554_090--Hb_150730_010 Hb_042083_060 Hb_042083_060 Hb_008554_090--Hb_042083_060 Hb_011861_020 Hb_011861_020 Hb_000057_180--Hb_011861_020 Hb_000057_180--Hb_150730_010 Hb_116469_010 Hb_116469_010 Hb_000057_180--Hb_116469_010 Hb_028927_010 Hb_028927_010 Hb_000057_180--Hb_028927_010 Hb_000471_010 Hb_000471_010 Hb_000057_180--Hb_000471_010 Hb_002003_030 Hb_002003_030 Hb_000057_180--Hb_002003_030 Hb_000017_320--Hb_002003_010 Hb_000017_320--Hb_002304_190 Hb_005766_010 Hb_005766_010 Hb_000017_320--Hb_005766_010 Hb_002685_100 Hb_002685_100 Hb_000017_320--Hb_002685_100 Hb_002304_190--Hb_002685_100 Hb_001832_110 Hb_001832_110 Hb_002304_190--Hb_001832_110 Hb_033312_050 Hb_033312_050 Hb_002304_190--Hb_033312_050 Hb_000336_280 Hb_000336_280 Hb_002304_190--Hb_000336_280 Hb_009486_120 Hb_009486_120 Hb_002304_190--Hb_009486_120 Hb_000834_210 Hb_000834_210 Hb_002003_010--Hb_000834_210 Hb_003160_050 Hb_003160_050 Hb_002003_010--Hb_003160_050 Hb_001114_120 Hb_001114_120 Hb_002003_010--Hb_001114_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.69807 19.8832 12.4585 0.00358531 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0347033 0.382358 0.0394331 29.2855 4.54753

CAGE analysis