Hb_005730_080

Information

Type -
Description -
Location Contig5730: 109074-109313
Sequence    

Annotation

kegg
ID sly:104649232
description 17.6 kDa class I heat shock protein-like
nr
ID XP_010326283.1
description PREDICTED: 17.6 kDa class I heat shock protein-like [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID K4CTK7
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc09g059210.1 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005730_080 0.0 - - PREDICTED: 17.6 kDa class I heat shock protein-like [Solanum lycopersicum]
2 Hb_000005_040 0.1513694857 - - PREDICTED: histone H2B.2 [Jatropha curcas]
3 Hb_002232_200 0.1590629054 - - PREDICTED: sugar carrier protein C-like [Jatropha curcas]
4 Hb_002900_060 0.1617661988 - - CI small heat shock protein 2 [Prunus salicina]
5 Hb_002260_190 0.1680614406 - - -
6 Hb_002022_050 0.1695843857 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
7 Hb_002595_100 0.1763853838 - - heat-shock protein, putative [Ricinus communis]
8 Hb_153558_010 0.1946534227 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
9 Hb_013394_090 0.2009922772 - - conserved hypothetical protein [Ricinus communis]
10 Hb_116436_010 0.2177380596 - - PREDICTED: uncharacterized protein LOC105766967 [Gossypium raimondii]
11 Hb_001142_020 0.2206410154 - - -
12 Hb_000115_170 0.2236699191 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
13 Hb_155911_010 0.2244408133 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
14 Hb_002073_070 0.2292090782 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
15 Hb_000362_230 0.2325404204 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_002890_190 0.237517421 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
17 Hb_000227_420 0.2384962096 - - PREDICTED: thermospermine synthase ACAULIS5-like [Jatropha curcas]
18 Hb_079543_010 0.243062284 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_007127_010 0.2487890762 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
20 Hb_000345_120 0.2495895383 - - PREDICTED: mediator of RNA polymerase II transcription subunit 37a [Jatropha curcas]

Gene co-expression network

sample Hb_005730_080 Hb_005730_080 Hb_000005_040 Hb_000005_040 Hb_005730_080--Hb_000005_040 Hb_002232_200 Hb_002232_200 Hb_005730_080--Hb_002232_200 Hb_002900_060 Hb_002900_060 Hb_005730_080--Hb_002900_060 Hb_002260_190 Hb_002260_190 Hb_005730_080--Hb_002260_190 Hb_002022_050 Hb_002022_050 Hb_005730_080--Hb_002022_050 Hb_002595_100 Hb_002595_100 Hb_005730_080--Hb_002595_100 Hb_000005_040--Hb_002260_190 Hb_000005_040--Hb_002022_050 Hb_000005_040--Hb_002900_060 Hb_000005_040--Hb_002595_100 Hb_000005_040--Hb_002232_200 Hb_001142_020 Hb_001142_020 Hb_000005_040--Hb_001142_020 Hb_002232_200--Hb_002900_060 Hb_002232_200--Hb_002022_050 Hb_002232_200--Hb_002260_190 Hb_002232_200--Hb_001142_020 Hb_002900_060--Hb_002595_100 Hb_002900_060--Hb_002260_190 Hb_002900_060--Hb_002022_050 Hb_002073_070 Hb_002073_070 Hb_002900_060--Hb_002073_070 Hb_002260_190--Hb_002022_050 Hb_002260_190--Hb_002595_100 Hb_002260_190--Hb_001142_020 Hb_155911_010 Hb_155911_010 Hb_002260_190--Hb_155911_010 Hb_002022_050--Hb_002595_100 Hb_002022_050--Hb_001142_020 Hb_002022_050--Hb_155911_010 Hb_002595_100--Hb_002073_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.327607 0.450047 0 0 40.9748 4.81355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.07068 0.74971

CAGE analysis